Detailed information NTG0842824

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: VYI54_RS14295
• Genome accession: NZ_CP142939
• Coordinates: 2903024..2904007 (-)
• Length: 327 a.a.
• NCBI ID: WP_001196486.1
• Uniprot ID: A7ZT85
• Organism: Escherichia coli strain B20127
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 2898024..2909007

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VYI54_RS14270 (VYI54_14270)	bcsF	2898185..2898376 (+)	192	WP_000988308.1	cellulose biosynthesis protein BcsF	-
VYI54_RS14275 (VYI54_14275)	bcsG	2898373..2900052 (+)	1680	WP_000191619.1	cellulose biosynthesis protein BcsG	-
VYI54_RS14280 (VYI54_14280)	ldrD	2900139..2900246 (-)	108	WP_000141634.1	type I toxin-antitoxin system toxic polypeptide LdrD	-
VYI54_RS14285 (VYI54_14285)	yhjV	2900722..2901993 (+)	1272	WP_001295225.1	aromatic amino acid transport family protein	-
VYI54_RS14290 (VYI54_14290)	amiE	2902023..2903027 (-)	1005	WP_039023208.1	dipeptide ABC transporter ATP-binding subunit DppF	Regulator
VYI54_RS14295 (VYI54_14295)	amiE	2903024..2904007 (-)	984	WP_001196486.1	dipeptide ABC transporter ATP-binding protein	Regulator
VYI54_RS14300 (VYI54_14300)	dppC	2904018..2904920 (-)	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
VYI54_RS14305 (VYI54_14305)	dppB	2904930..2905949 (-)	1020	WP_000938855.1	dipeptide ABC transporter permease DppB	-
VYI54_RS14315 (VYI54_14315)	dppA	2906257..2907864 (-)	1608	WP_001222883.1	dipeptide ABC transporter substrate-binding protein DppA	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35844.36 Da
• Isoelectric Point: 6.5814

>NTDB_id=842824 VYI54_RS14295 WP_001196486.1 2903024..2904007(-) (amiE) [Escherichia coli strain B20127]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide

• Length: 984 bp

>NTDB_id=842824 VYI54_RS14295 WP_001196486.1 2903024..2904007(-) (amiE) [Escherichia coli strain B20127]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

• ABC transporter (ABC_tran) (24-181)

3D structure

• AlphaFold DB: A7ZT85

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	43.302	98.165	0.425
amiE	Streptococcus thermophilus LMG 18311	42.991	98.165	0.422
amiE	Streptococcus thermophilus LMD-9	42.991	98.165	0.422
oppD	Streptococcus mutans UA159	41.379	97.554	0.404