Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QRX25_RS01795 Genome accession   NZ_CP127224
Coordinates   363088..363525 (-) Length   145 a.a.
NCBI ID   WP_212100261.1    Uniprot ID   -
Organism   Bacillus sp. L381     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 358088..368525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX25_RS01770 (QRX25_01770) - 359106..360242 (+) 1137 WP_071348421.1 zinc-dependent alcohol dehydrogenase -
  QRX25_RS01775 (QRX25_01775) - 360257..360691 (+) 435 WP_013350964.1 RDD family protein -
  QRX25_RS01780 (QRX25_01780) - 360764..361087 (+) 324 WP_212100253.1 YckD family protein -
  QRX25_RS01785 (QRX25_01785) - 361192..362628 (+) 1437 WP_212100256.1 family 1 glycosylhydrolase -
  QRX25_RS01790 (QRX25_01790) nin/comJ 362669..363067 (-) 399 WP_212100259.1 competence protein ComJ Regulator
  QRX25_RS01795 (QRX25_01795) nucA/comI 363088..363525 (-) 438 WP_212100261.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QRX25_RS01800 (QRX25_01800) hxlB 363875..364432 (-) 558 WP_212100263.1 6-phospho-3-hexuloisomerase -
  QRX25_RS01805 (QRX25_01805) hxlA 364429..365064 (-) 636 WP_212100265.1 3-hexulose-6-phosphate synthase -
  QRX25_RS01810 (QRX25_01810) - 365296..365658 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16086.38 Da        Isoelectric Point: 8.4850

>NTDB_id=842781 QRX25_RS01795 WP_212100261.1 363088..363525(-) (nucA/comI) [Bacillus sp. L381]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKLILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=842781 QRX25_RS01795 WP_212100261.1 363088..363525(-) (nucA/comI) [Bacillus sp. L381]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGTTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641