Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QRX25_RS00585 Genome accession   NZ_CP127224
Coordinates   106636..108015 (+) Length   459 a.a.
NCBI ID   WP_065980549.1    Uniprot ID   -
Organism   Bacillus sp. L381     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101636..113015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX25_RS00565 (QRX25_00565) ctsR 101984..102448 (+) 465 WP_003156396.1 transcriptional regulator CtsR -
  QRX25_RS00570 (QRX25_00570) - 102462..103019 (+) 558 WP_212101610.1 UvrB/UvrC motif-containing protein -
  QRX25_RS00575 (QRX25_00575) - 103019..104110 (+) 1092 WP_013350790.1 protein arginine kinase -
  QRX25_RS00580 (QRX25_00580) clpC 104107..106542 (+) 2436 WP_013350791.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  QRX25_RS00585 (QRX25_00585) radA 106636..108015 (+) 1380 WP_065980549.1 DNA repair protein RadA Machinery gene
  QRX25_RS00590 (QRX25_00590) disA 108019..109101 (+) 1083 WP_014469611.1 DNA integrity scanning diadenylate cyclase DisA -
  QRX25_RS00595 (QRX25_00595) - 109215..110315 (+) 1101 WP_013350794.1 PIN/TRAM domain-containing protein -
  QRX25_RS00600 (QRX25_00600) ispD 110329..111027 (+) 699 WP_212101613.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QRX25_RS00605 (QRX25_00605) ispF 111020..111496 (+) 477 WP_013350796.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49536.94 Da        Isoelectric Point: 7.1316

>NTDB_id=842778 QRX25_RS00585 WP_065980549.1 106636..108015(+) (radA) [Bacillus sp. L381]
MAKSKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVQTKLEEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLADTAGSVLYISGEESVKQTKLRADRLGINSQLLHVLSETDMEYIS
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGASGSSIVASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMVIPEANTDGWTIPKGIEVVGVANVAEALRTSLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=842778 QRX25_RS00585 WP_065980549.1 106636..108015(+) (radA) [Bacillus sp. L381]
ATGGCTAAATCAAAAACAAAATTCATCTGCCACTCATGCGGTTATGAATCCGCAAAATGGATGGGAAAGTGCCCGGGCTG
CGGGGCTTGGAATACAATGGTGGAAGAAACCATAAAAAAAGCGCCGGCGAATCGGCGGGCGGCTTTCTCCCACTCCGTTC
AAACCGTCCAGAAACCATCACCCATTACATCAATTGAAACATCAGAAGAACCCCGCGTTCAAACCAAGCTCGAAGAATTC
AACAGAGTGCTTGGCGGCGGAGTTGTGAAGGGTTCGTTAGTATTAATCGGCGGCGATCCCGGCATCGGAAAATCAACGCT
CCTTCTTCAAGTATCCGCACAATTAGCAGACACGGCCGGCAGCGTGCTTTACATCTCTGGGGAAGAATCTGTGAAGCAAA
CGAAGCTGCGCGCCGACAGACTTGGAATCAACAGCCAATTGTTACATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTTGTCGTAGACTCCATTCAGACCGTTTACCAAAGTGATATCACCTCAGC
TCCCGGCAGTGTATCACAAGTAAGAGAGTGTACGGCCGAATTGATGAAAATCGCGAAAACAAACGGCATACCTATTTTTA
TCGTCGGACACGTCACAAAAGAAGGATCGATCGCAGGACCGAGATTGCTTGAGCATATGGTCGATACGGTTCTATACTTT
GAAGGAGAGCGGCACCATACATTCCGTATTTTGCGGGCTGTAAAAAACCGTTTCGGCTCAACAAATGAAATGGGCATCTT
TGAAATGCGGGAAGAAGGGCTTACAGAAGTGCTGAACCCTTCTGAAATTTTCTTAGAAGAGCGTTCTGCCGGGGCTTCGG
GTTCGAGTATCGTTGCGTCAATGGAAGGTACGAGACCGATCTTAGTTGAAATCCAGGCGCTCATATCACCGACCAGCTTC
GGAAATCCGCGCCGCATGGCTACAGGAATTGACCACAACAGGGTGTCGTTAATCATGGCCGTGCTTGAGAAGCGGGTGGG
GCTGTTGCTTCAAAATCAAGACGCGTATTTAAAAGTCGCCGGCGGGGTCAAACTGGATGAACCGGCGATTGATTTAGCAG
TAGCCGTCAGCATTGCTTCAAGCTTCAGAGATACACCGCCAAATCCTGCAGATTGCTTTATCGGTGAAGTGGGTCTGACA
GGAGAAGTCCGCAGAGTGTCAAGAATCGAACAGCGCGTAAAAGAAGCGGCGAAGCTCGGCTTCAAGCGTATGGTCATACC
TGAGGCGAATACAGACGGATGGACAATACCAAAAGGGATTGAGGTTGTCGGAGTAGCAAATGTTGCAGAAGCGCTTCGTA
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-222)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

93.231

99.782

0.93
  radA Streptococcus pneumoniae Rx1

63.797

98.693

0.63
  radA Streptococcus pneumoniae D39

63.797

98.693

0.63
  radA Streptococcus pneumoniae R6

63.797

98.693

0.63
  radA Streptococcus pneumoniae TIGR4

63.797

98.693

0.63
  radA Streptococcus mitis NCTC 12261

63.797

98.693

0.63
  radA Streptococcus mitis SK321

63.576

98.693

0.627