Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRX25_RS00250 Genome accession   NZ_CP127224
Coordinates   45554..45844 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus sp. L381     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40554..50844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX25_RS00210 (QRX25_00210) darA 40571..40900 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  QRX25_RS00215 (QRX25_00215) - 40913..41353 (+) 441 WP_065980523.1 DUF327 family protein -
  QRX25_RS00220 (QRX25_00220) holB 41365..42354 (+) 990 WP_212100047.1 DNA polymerase III subunit delta' -
  QRX25_RS00225 (QRX25_00225) ricT 42357..43184 (+) 828 WP_065980525.1 competence/sporulation regulator complex protein RicT -
  QRX25_RS00230 (QRX25_00230) yabA 43199..43558 (+) 360 WP_013350748.1 replication initiation-control protein YabA -
  QRX25_RS00235 (QRX25_00235) - 43619..44362 (+) 744 WP_212100050.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QRX25_RS00240 (QRX25_00240) - 44349..44648 (+) 300 WP_065521836.1 GIY-YIG nuclease family protein -
  QRX25_RS00245 (QRX25_00245) rsmI 44623..45504 (+) 882 WP_212100053.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QRX25_RS00250 (QRX25_00250) abrB 45554..45844 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  QRX25_RS00255 (QRX25_00255) metG 46327..48318 (+) 1992 WP_115998365.1 methionine--tRNA ligase -
  QRX25_RS00260 (QRX25_00260) - 48395..49162 (+) 768 WP_212100057.1 TatD family hydrolase -
  QRX25_RS00265 (QRX25_00265) - 49297..50616 (+) 1320 WP_212100060.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=842776 QRX25_RS00250 WP_169510469.1 45554..45844(-) (abrB) [Bacillus sp. L381]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=842776 QRX25_RS00250 WP_169510469.1 45554..45844(-) (abrB) [Bacillus sp. L381]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979