Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QQ984_RS09940 Genome accession   NZ_CP127223
Coordinates   1922542..1922745 (+) Length   67 a.a.
NCBI ID   WP_003182112.1    Uniprot ID   A0A5Q3BNZ5
Organism   Bacillus licheniformis strain Jrh14-10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1917542..1927745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ984_RS09905 (QQ984_09905) - 1917558..1918022 (+) 465 WP_003182064.1 Fur family transcriptional regulator -
  QQ984_RS09910 (QQ984_09910) - 1918067..1918732 (+) 666 WP_009328436.1 GntR family transcriptional regulator -
  QQ984_RS09915 (QQ984_09915) - 1918740..1919708 (+) 969 WP_011197999.1 multidrug resistance efflux transporter family protein -
  QQ984_RS09920 (QQ984_09920) - 1919763..1920524 (-) 762 WP_017474794.1 N-acetylmuramoyl-L-alanine amidase -
  QQ984_RS09930 (QQ984_09930) - 1921057..1921539 (-) 483 WP_003182102.1 DMT family transporter -
  QQ984_RS09935 (QQ984_09935) - 1921562..1922014 (-) 453 WP_003182104.1 DMT family transporter -
  QQ984_RS09940 (QQ984_09940) rok 1922542..1922745 (+) 204 WP_003182112.1 hypothetical protein Regulator
  QQ984_RS09945 (QQ984_09945) - 1922959..1923582 (+) 624 WP_009328434.1 TetR/AcrR family transcriptional regulator -
  QQ984_RS09950 (QQ984_09950) - 1923585..1923971 (+) 387 WP_009328433.1 OsmC family protein -
  QQ984_RS09955 (QQ984_09955) - 1924004..1925353 (+) 1350 WP_011198001.1 cytosine permease -
  QQ984_RS09960 (QQ984_09960) - 1925378..1927483 (+) 2106 WP_011201659.1 hydantoinase/oxoprolinase family protein -

Sequence

Protein


Download         Length: 67 a.a.        Molecular weight: 8116.34 Da        Isoelectric Point: 9.8619

>NTDB_id=842735 QQ984_RS09940 WP_003182112.1 1922542..1922745(+) (rok) [Bacillus licheniformis strain Jrh14-10]
MFNEREALRLRLEQLNNAEIQIIRELQSERKDIYSRLRELDRQKVSSSHHKKTLLELVDETVNLLKK

Nucleotide


Download         Length: 204 bp        

>NTDB_id=842735 QQ984_RS09940 WP_003182112.1 1922542..1922745(+) (rok) [Bacillus licheniformis strain Jrh14-10]
GTGTTCAACGAAAGAGAGGCGCTCCGATTAAGACTGGAGCAACTGAACAATGCCGAGATTCAGATCATACGCGAACTCCA
AAGTGAGCGGAAAGACATTTATTCCAGGCTGCGGGAATTAGATCGTCAAAAAGTTTCTTCATCACATCATAAAAAAACTT
TATTAGAGTTAGTCGATGAAACTGTAAATCTCTTGAAAAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q3BNZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

70.213

70.149

0.493