Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DBT39_RS00350 Genome accession   NZ_CP127213
Coordinates   74024..75412 (+) Length   462 a.a.
NCBI ID   WP_111818631.1    Uniprot ID   -
Organism   Aerococcus loyolae strain UMB0509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69024..80412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBT39_RS00335 (DBT39_00335) - 69999..72923 (+) 2925 WP_070598021.1 insulinase family protein -
  DBT39_RS00340 (DBT39_00340) - 73142..73327 (-) 186 WP_064292690.1 hypothetical protein -
  DBT39_RS00345 (DBT39_00345) - 73495..74004 (+) 510 WP_064292706.1 dUTP diphosphatase -
  DBT39_RS00350 (DBT39_00350) radA 74024..75412 (+) 1389 WP_111818631.1 DNA repair protein RadA Machinery gene
  DBT39_RS00355 (DBT39_00355) - 75499..76671 (+) 1173 WP_064292692.1 PIN/TRAM domain-containing protein -
  DBT39_RS00360 (DBT39_00360) - 76779..77594 (-) 816 WP_064292693.1 Cof-type HAD-IIB family hydrolase -
  DBT39_RS00365 (DBT39_00365) - 77761..78462 (+) 702 WP_064292694.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50481.70 Da        Isoelectric Point: 6.4078

>NTDB_id=842675 DBT39_RS00350 WP_111818631.1 74024..75412(+) (radA) [Aerococcus loyolae strain UMB0509]
MAKKKRKTVYTCQACGYESPQWYGKCPQCGAWNTLEEEVIAGKPIRQAGTEVNQKKAKPERLKEVSQAEEKRVKTGLGEF
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVAKQLSDNGSRVLYVSGEESLHQIKMRADRLGYQDADFFVYAETDLLAIE
AAFSDTQADFVVIDSIQTMVHPNNESLAGSVSQVREATGELMHIAKSSGIAIFVVGHVTKEGNIAGPRILEHMVDTVLYL
EGEKHNTFRILRAVKNRFGSTNEIGVFDMKSQGLEEVTNPSQLFLEERLMGANGSAVVASMEGTRPILTEIQALLSATAF
GNARRTASGLDYSRVTLIMAVLEKRAHLMLQNQDAYLKSTGGVKLDEPAIDLAIAVAVASSYWEKETQASDCFVGEIGLT
GEIRRISRINERIQEAEKLGFKRIFIPYGNLQGLATDSQDIEIIGAKTLTQVLKEVFLPQGR

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=842675 DBT39_RS00350 WP_111818631.1 74024..75412(+) (radA) [Aerococcus loyolae strain UMB0509]
ATGGCTAAAAAGAAGCGAAAAACTGTCTACACTTGCCAGGCTTGTGGCTATGAATCACCTCAGTGGTATGGGAAATGTCC
CCAATGCGGAGCTTGGAATACTCTGGAAGAGGAAGTGATTGCGGGGAAGCCCATCCGCCAAGCTGGGACAGAGGTCAATC
AGAAAAAAGCCAAGCCTGAACGCCTCAAGGAAGTCAGCCAGGCGGAAGAAAAACGGGTAAAGACTGGCTTAGGCGAGTTC
AACCGGGTCCTCGGTGGCGGGGTAGTCCCTGGGTCTTTGGTCCTGATTGGTGGGGATCCCGGCATTGGGAAGTCAACCCT
GCTCCTCCAGGTGGCCAAGCAATTAAGTGATAATGGTAGCCGGGTCCTCTATGTTTCCGGTGAAGAAAGTCTACATCAAA
TCAAGATGCGGGCTGACCGTCTAGGCTACCAGGATGCGGACTTTTTTGTTTATGCGGAAACCGACCTCTTGGCCATTGAA
GCGGCGTTTTCTGATACCCAGGCGGATTTTGTGGTGATTGATTCCATTCAAACCATGGTCCATCCCAATAATGAATCCTT
AGCCGGTAGTGTCAGTCAGGTCAGAGAAGCGACCGGGGAACTCATGCATATCGCCAAAAGCTCTGGAATCGCCATCTTTG
TGGTCGGCCATGTGACCAAGGAAGGTAATATTGCCGGACCGCGGATTCTCGAACACATGGTGGACACAGTCTTGTACTTG
GAAGGGGAGAAGCATAACACCTTCCGAATCCTAAGAGCGGTCAAAAACCGTTTTGGGTCGACCAATGAAATCGGAGTTTT
TGACATGAAAAGTCAGGGCCTGGAAGAGGTCACCAACCCTAGCCAGCTCTTTTTAGAAGAACGGCTCATGGGAGCCAATG
GGTCGGCAGTGGTTGCTTCCATGGAAGGAACGCGTCCGATTCTAACCGAAATCCAAGCCCTCTTGTCGGCTACAGCCTTT
GGGAATGCCCGCCGTACCGCCAGTGGTTTGGACTATTCCCGGGTGACCCTCATTATGGCGGTTTTAGAGAAGCGGGCCCA
TCTCATGCTGCAGAACCAAGATGCCTACCTTAAGTCAACTGGTGGGGTCAAACTCGATGAACCGGCCATTGACCTAGCTA
TTGCTGTAGCTGTGGCTTCCAGTTACTGGGAGAAGGAAACCCAGGCCAGCGATTGCTTTGTGGGTGAGATTGGCCTGACC
GGTGAAATTCGTCGGATTTCCCGGATTAATGAACGGATCCAAGAAGCGGAAAAATTAGGTTTTAAACGGATCTTTATCCC
CTATGGGAACCTGCAAGGCCTGGCGACCGATAGTCAAGACATTGAAATTATTGGTGCCAAGACCCTGACTCAAGTTCTCA
AAGAAGTCTTTCTCCCTCAGGGAAGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-222)

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

63.355

98.052

0.621
  radA Streptococcus pneumoniae Rx1

63.355

98.052

0.621
  radA Streptococcus pneumoniae D39

63.355

98.052

0.621
  radA Streptococcus pneumoniae R6

63.355

98.052

0.621
  radA Streptococcus pneumoniae TIGR4

63.355

98.052

0.621
  radA Streptococcus mitis NCTC 12261

63.135

98.052

0.619
  radA Bacillus subtilis subsp. subtilis str. 168

62.5

98.701

0.617