Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   QQS40_RS11090 Genome accession   NZ_CP127167
Coordinates   2207279..2207821 (-) Length   180 a.a.
NCBI ID   WP_329505325.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2202279..2212821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS11065 - 2202655..2203098 (-) 444 WP_049356994.1 methyltransferase family protein -
  QQS40_RS11070 - 2203150..2203764 (-) 615 WP_049356996.1 YfgM family protein -
  QQS40_RS11075 hisS 2203783..2205054 (-) 1272 WP_329505321.1 histidine--tRNA ligase -
  QQS40_RS11080 ispG 2205064..2206170 (-) 1107 WP_005695590.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  QQS40_RS11085 - 2206189..2207211 (-) 1023 WP_329505323.1 RodZ family helix-turn-helix domain-containing protein -
  QQS40_RS11090 pilF/pilF2 2207279..2207821 (-) 543 WP_329505325.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  QQS40_RS11095 - 2207891..2209039 (-) 1149 WP_197542296.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  QQS40_RS11100 - 2209341..2210216 (+) 876 WP_329505329.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QQS40_RS11105 - 2210370..2211251 (+) 882 WP_049364985.1 metal ABC transporter substrate-binding protein -
  QQS40_RS11110 - 2211251..2212147 (+) 897 WP_049385015.1 manganese/iron ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20367.03 Da        Isoelectric Point: 6.0918

>NTDB_id=842329 QQS40_RS11090 WP_329505325.1 2207279..2207821(-) (pilF/pilF2) [Haemophilus parainfluenzae strain HP01]
MKLIPINILSAVIFPFVFSACVSQSSVDFNKQQAAKARVELALGYLQQEDFVQAKLNLDKAFEHDERYYLVHSALAHFYQ
LQGDTEKAKQAYLLAIKLDDKQGDVYNNFGAFLCGQGEFEQAYSQFNAALAAPNYYHQADTYENMALCAFAGKQTDAYQQ
ALEKLRQVDPSRAEKLRSLK

Nucleotide


Download         Length: 543 bp        

>NTDB_id=842329 QQS40_RS11090 WP_329505325.1 2207279..2207821(-) (pilF/pilF2) [Haemophilus parainfluenzae strain HP01]
ATGAAATTAATCCCAATTAACATTCTAAGTGCGGTCATTTTTCCTTTTGTTTTTTCTGCTTGCGTCTCTCAGTCTTCTGT
TGATTTTAATAAACAACAAGCAGCAAAAGCGCGCGTTGAATTGGCATTAGGCTATCTGCAACAAGAGGATTTTGTTCAAG
CAAAACTTAACTTAGATAAAGCCTTTGAACATGATGAACGCTATTATCTTGTGCACTCGGCACTTGCGCATTTTTATCAA
TTACAAGGCGATACGGAAAAAGCGAAGCAAGCTTATTTACTGGCGATTAAGTTAGATGATAAGCAAGGCGATGTGTATAA
CAACTTTGGTGCATTTCTATGTGGGCAAGGTGAGTTTGAACAAGCTTATTCACAATTTAATGCGGCACTCGCTGCACCAA
ATTATTATCATCAAGCAGATACCTACGAAAACATGGCACTTTGTGCTTTTGCCGGAAAACAAACCGATGCTTATCAACAG
GCATTGGAGAAATTACGCCAAGTTGATCCTTCTAGAGCGGAAAAGCTCCGTTCACTCAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

65.698

95.556

0.628
  pilF Glaesserella parasuis strain SC1401

48.588

98.333

0.478