Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   QQS40_RS07055 Genome accession   NZ_CP127167
Coordinates   1364203..1366605 (+) Length   800 a.a.
NCBI ID   WP_172622016.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1359203..1371605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS11235 - 1359956..1360594 (+) 639 WP_420485548.1 pentapeptide repeat-containing protein -
  QQS40_RS07035 dcuC 1361127..1361351 (+) 225 Protein_1358 anaerobic C4-dicarboxylate transporter DcuC -
  QQS40_RS07040 folK 1361406..1361909 (-) 504 WP_128787529.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  QQS40_RS07045 pcnB 1361909..1363168 (-) 1260 WP_420485549.1 polynucleotide adenylyltransferase PcnB -
  QQS40_RS07050 dksA 1363503..1363940 (-) 438 WP_128787527.1 RNA polymerase-binding protein DksA -
  QQS40_RS07055 rec2 1364203..1366605 (+) 2403 WP_172622016.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QQS40_RS07060 msbA 1366657..1368405 (+) 1749 WP_297568630.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QQS40_RS07065 lpxK 1368459..1369439 (+) 981 WP_329504551.1 tetraacyldisaccharide 4'-kinase -
  QQS40_RS07070 - 1369457..1369636 (+) 180 WP_070583226.1 Trm112 family protein -
  QQS40_RS07075 kdsB 1369646..1370413 (+) 768 WP_329504555.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QQS40_RS07080 - 1370511..1371470 (+) 960 WP_289901244.1 hypothetical protein -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 90592.12 Da        Isoelectric Point: 9.1747

>NTDB_id=842323 QQS40_RS07055 WP_172622016.1 1364203..1366605(+) (rec2) [Haemophilus parainfluenzae strain HP01]
MKLTLFQLCIMLIISAFSLLIVPDFLLFTWQRAGLSILMLVMTAFCFHWFNYFKVRNFCINGICFLLALAYVHSQALSLL
TQAEKISSLPNKIALDLHISEIFHQQDYQTLVARTSLFDGQEQRIFINWKTPEKPQLGEVWRADVKLRPISARLNHGGFD
RQQWYFSKRIIAVGNVKSAVKIGEDFSFRTHFLQNSLKQTEGLSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGLGFFFARFLQLALPTRFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALVFIAILQFSRRYYTPLQMLC
LVVVFLLFCDPLMPLSVSFWLSIGAVTCLIVWYRYVPLSIIEWRHQKLSNKVRWILGLFHLQLGLLILFTPIQLFFFNGT
ALNGFLANLIAVPLYSFLLVPLILFAVLTNGAFSSWHLSNAIAQGITQCLSFFQGWYMPISINLSLILTTLLSLVFGGML
YGLYFASQRKTKNTPLKSSRFFTLNSTKILSPEEYKQALRSVIFIFCFCIGTLGYRYIMKPKWQLDTLDVGQGLATLIVK
DGKGVLYDTGPAWQSGIGGSSMVELEILPYLQREGIELETLILSHDDNDHSGGAKAILAAYPEIELITPSRKNYGETHRT
FCLQEKQWQWQGLDFKILSPAQITDRAENPQSCVILFTDGQYQILLTGDADVATERSFAENLGKINVLQVGHHGSKTSTG
EILLAQTKPDLALISSGRWNAWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=842323 QQS40_RS07055 WP_172622016.1 1364203..1366605(+) (rec2) [Haemophilus parainfluenzae strain HP01]
ATGAAACTCACGTTATTTCAACTGTGCATCATGCTCATCATTTCAGCCTTTTCTTTGCTTATCGTGCCTGATTTTTTACT
GTTTACCTGGCAACGAGCGGGGCTGAGCATTTTAATGTTGGTTATGACTGCATTTTGTTTCCATTGGTTCAATTATTTTA
AAGTCAGAAATTTTTGCATTAACGGCATTTGTTTTTTGCTTGCCTTAGCTTACGTGCATTCACAAGCCTTGTCCTTATTG
ACTCAAGCAGAAAAAATCTCCAGTTTACCGAATAAAATCGCTTTAGATCTTCACATCTCAGAAATTTTTCATCAGCAAGA
TTATCAAACGTTGGTTGCAAGAACGTCCTTATTTGATGGGCAAGAACAACGGATTTTTATTAATTGGAAAACACCTGAAA
AGCCACAGTTAGGCGAAGTTTGGCGAGCTGATGTAAAGCTTCGTCCTATTTCGGCGAGATTAAATCATGGAGGGTTTGAT
CGACAACAATGGTATTTTTCCAAAAGAATTATTGCCGTAGGGAATGTGAAAAGTGCGGTCAAAATTGGTGAAGATTTTTC
TTTCCGCACACATTTTCTACAAAATAGCCTCAAACAGACGGAAGGGCTTTCTTTACAAGGTTTACTTATCGCATTGGCAT
TTGGTGAGCGAGCTTGGCTGGATAATAAAACGTGGCTGATTTACCAACAAACGAATACAGCACATTTAATTGCCATTTCA
GGACTCCATATCGGTTTAGCAATGGGCTTAGGCTTTTTCTTTGCTCGATTCTTGCAACTTGCACTGCCTACACGCTTTAT
TTCGCCCTGGTTTCCGCTTTGCTTTGGTGTATTGATTGCTTTAGGTTATGCCTATTTAGCTGGATTTAGTTTACCAACCT
TCCGTGCAATGATGGCATTGGTTTTTATTGCCATCCTTCAATTTTCTCGGCGATATTACACACCTTTGCAAATGCTGTGT
TTGGTGGTAGTATTTTTGCTTTTTTGTGATCCGCTTATGCCGCTTTCGGTGAGCTTTTGGCTTTCAATTGGTGCCGTTAC
CTGTCTGATTGTGTGGTACCGATATGTTCCCTTATCAATCATTGAATGGCGACATCAAAAATTATCCAACAAAGTGCGGT
GGATTTTAGGCTTGTTTCATTTGCAGTTGGGGCTGCTGATTTTATTCACGCCTATTCAGCTTTTCTTTTTTAATGGTACG
GCGTTAAATGGATTCTTAGCAAATTTAATTGCAGTGCCCTTGTATAGTTTCTTACTTGTACCCTTAATTCTCTTTGCGGT
ATTAACGAATGGTGCATTTTCTTCTTGGCATCTTTCAAATGCGATTGCTCAAGGTATTACACAATGCCTTAGTTTTTTCC
AAGGCTGGTACATGCCGATTTCAATTAATTTATCTCTCATTCTGACCACACTTTTAAGCCTTGTTTTCGGCGGAATGTTA
TATGGTTTGTATTTTGCATCTCAAAGGAAAACAAAAAACACACCGCTAAAATCAAGTCGATTTTTCACATTAAACAGCAC
AAAAATCTTATCACCAGAAGAGTATAAACAAGCGCTTCGTAGTGTCATTTTTATTTTTTGTTTTTGTATTGGCACGCTTG
GGTATCGATATATCATGAAACCCAAATGGCAGTTAGATACGTTAGATGTTGGACAAGGTTTAGCAACCTTAATTGTGAAA
GACGGGAAAGGTGTATTGTATGACACAGGGCCTGCTTGGCAGAGTGGAATAGGTGGCTCTTCTATGGTGGAATTGGAAAT
ATTGCCTTATCTTCAACGAGAAGGCATTGAACTTGAAACCTTGATTTTAAGCCATGATGATAATGATCATTCGGGCGGCG
CCAAAGCGATTTTAGCCGCATATCCAGAGATTGAACTGATTACACCTTCTCGTAAAAACTATGGCGAAACGCACCGCACT
TTTTGTCTTCAGGAGAAACAGTGGCAGTGGCAAGGGCTTGATTTTAAAATTCTTTCACCCGCGCAAATAACCGATAGGGC
GGAGAATCCCCAATCTTGCGTGATTTTATTCACGGATGGACAGTATCAGATTCTGTTAACCGGTGATGCGGATGTGGCAA
CAGAAAGATCTTTTGCTGAAAACCTCGGCAAGATTAATGTGTTACAGGTAGGACATCATGGTAGTAAAACTTCAACAGGC
GAGATTTTACTGGCACAGACAAAACCTGATCTAGCCTTAATTTCAAGCGGGCGATGGAATGCGTGGAATTTTCCTCATCC
AACCGTCATTGAACGATTAAATCGTTATCAAAGTGCGGTCGAAAATACCGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAGGGCATTGAAATTGAAAAGGCGAGAGGAGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(31-179)

Competence protein (Competence)

(212-477)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

60.549

100

0.606