Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QQS40_RS05710 Genome accession   NZ_CP127167
Coordinates   1117159..1118112 (+) Length   317 a.a.
NCBI ID   WP_269471709.1    Uniprot ID   A0A3S4WT00
Organism   Haemophilus parainfluenzae strain HP01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1112159..1123112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS05690 accA 1112742..1113689 (-) 948 WP_075915680.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  QQS40_RS05695 znuB 1113777..1114562 (-) 786 WP_329506688.1 zinc ABC transporter permease subunit ZnuB -
  QQS40_RS05700 znuC 1114572..1115366 (-) 795 WP_329504246.1 zinc ABC transporter ATP-binding protein ZnuC -
  QQS40_RS05705 mepM 1115546..1117021 (+) 1476 WP_329504248.1 murein DD-endopeptidase MepM -
  QQS40_RS05710 ceuB 1117159..1118112 (+) 954 WP_269471709.1 ABC transporter permease Machinery gene
  QQS40_RS05715 - 1118105..1119064 (+) 960 WP_289901363.1 iron chelate uptake ABC transporter family permease subunit -
  QQS40_RS05720 - 1119055..1119816 (+) 762 WP_289901362.1 ABC transporter ATP-binding protein -
  QQS40_RS05725 - 1119831..1120739 (+) 909 WP_329504257.1 siderophore ABC transporter substrate-binding protein -
  QQS40_RS05730 - 1120860..1121810 (+) 951 WP_289901360.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35008.28 Da        Isoelectric Point: 10.2813

>NTDB_id=842320 QQS40_RS05710 WP_269471709.1 1117159..1118112(+) (ceuB) [Haemophilus parainfluenzae strain HP01]
MIKRRYLIFLLIVLSFVSLFLGVSTVNLKGLLNFEGNQWQIFLISRVPRLISILIAGASLSICGLVMQQLSRNRFISPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=842320 QQS40_RS05710 WP_269471709.1 1117159..1118112(+) (ceuB) [Haemophilus parainfluenzae strain HP01]
ATGATTAAGCGACGTTATCTCATTTTTCTTTTGATCGTGCTTTCCTTTGTCTCACTTTTTCTCGGGGTGAGCACTGTTAA
TCTGAAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATCTTTTTAATTAGTCGCGTGCCTCGCTTAATCAGTATCT
TGATTGCTGGCGCATCCTTGAGTATTTGTGGCTTGGTGATGCAGCAACTCAGTCGAAACCGATTTATTTCTCCCACCACG
GCGGGCACAATGGACAGCGCACGATTAGGCATTTTAATGGCGATGCTGTTTTTCCCAACGGCTTCGATGTTGTTAAAAAC
CACCATTGCGGTAATAGTATCTTTCCTTGGCACATTGTTATTCATGACGATTCTGTCCCGTTTGAAATTCAAGGACACGA
TTTTTGTGCCTTTAGTGGGGATTATGTTCGGCAATATCATCAGTTCAATTACCGCCTTTATTGCTTATAAAGAAGATTTA
TTACAAAACTTATCCGGGTGGCTACAAGGAGACTTTTCTCTTGTGATGTCAGGCCGCTATGAATTGTTGTATTTCAGTAT
TCCTACCCTCATCGTAGCTTATTTATTTGCACATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTGG
GTCTAAATTACAACCAAGTACTTTATCTCGGCCTGCTCATTGTGGCGGTCGTATCTTCGATTATTATTGTGTCTGTTGGC
GTGATTCCTTTCTTGGGGTTAATTATCCCGAATATCGTCACACTTTATTTGGGTGATAACTTGAAGAAAGTGTTATCTCA
TACCGCCTTGTTGGGTGCCGTATTTGTTTTATTCTGCGATATTTTAGGGCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTAGTTGGCGTATTTGGCAGTGGTATCTTCTTATTTTTATTATTAAAGCGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4WT00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543