Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LDN84_RS19690 | Genome accession | NZ_AP024238 |
| Coordinates | 4272134..4273264 (+) | Length | 376 a.a. |
| NCBI ID | WP_223905139.1 | Uniprot ID | - |
| Organism | Rhodoferax lithotrophicus strain MIZ03 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4267134..4278264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDN84_RS19660 (MIZ03_4150) | - | 4267180..4267488 (-) | 309 | WP_223905132.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| LDN84_RS19665 (MIZ03_4151) | - | 4267537..4267992 (-) | 456 | WP_223905133.1 | universal stress protein | - |
| LDN84_RS19670 (MIZ03_4152) | coaD | 4268014..4268514 (-) | 501 | WP_223913175.1 | pantetheine-phosphate adenylyltransferase | - |
| LDN84_RS19675 (MIZ03_4153) | rsmD | 4268551..4269180 (-) | 630 | WP_223905135.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| LDN84_RS19680 (MIZ03_4154) | - | 4269256..4270656 (-) | 1401 | WP_223905137.1 | pitrilysin family protein | - |
| LDN84_RS19685 (MIZ03_4155) | - | 4270674..4271957 (-) | 1284 | WP_223913178.1 | pitrilysin family protein | - |
| LDN84_RS19690 (MIZ03_4156) | pilA | 4272134..4273264 (+) | 1131 | WP_223905139.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| LDN84_RS19695 (MIZ03_4157) | - | 4273299..4274624 (+) | 1326 | WP_223905141.1 | Hsp70 family protein | - |
| LDN84_RS19700 (MIZ03_4158) | hslU | 4274822..4276153 (+) | 1332 | WP_223905143.1 | ATP-dependent protease ATPase subunit HslU | - |
| LDN84_RS19705 (MIZ03_4160) | mraZ | 4276400..4276828 (+) | 429 | WP_223905145.1 | division/cell wall cluster transcriptional repressor MraZ | - |
| LDN84_RS19710 (MIZ03_4161) | rsmH | 4276838..4277794 (+) | 957 | WP_223905147.1 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH | - |
| LDN84_RS19715 (MIZ03_4162) | ftsL | 4277791..4278126 (+) | 336 | WP_223905149.1 | cell division protein FtsL | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 39798.72 Da Isoelectric Point: 9.3518
>NTDB_id=84228 LDN84_RS19690 WP_223905139.1 4272134..4273264(+) (pilA) [Rhodoferax lithotrophicus strain MIZ03]
MFSFFRKKSPPPVQPTVVAPPAPQEQPVIRQEPTPERLPETSRAPASPPSAASNMPEAVATPARKSWIDKLKAGLRKTGA
SIATVFTGTQIDDALYEDLEAALLMADTGVKATEHLLQDLKRRVKDSKTTDPAAVKGLLVESLTSLLTPLQKPLLIGRFK
PTVIMVAGVNGAGKTTSIGKLTRHLATSNASVLLAAADTFRAAAREQLGVWADRTAVDIISQDGGDPAAVAFDAVSAGKA
RGRDVVLVDTAGRLPTQLHLMEELKKIKRVVQKTGPCNDNANLSSSTEASSLPPHEVLLVIDGNTGQNALTQVKAFDDAL
GLTGLIVTKLDGTAKGGVLAAIARERPIPVYFIGVGEKLEDLETFNAREFSQALLS
MFSFFRKKSPPPVQPTVVAPPAPQEQPVIRQEPTPERLPETSRAPASPPSAASNMPEAVATPARKSWIDKLKAGLRKTGA
SIATVFTGTQIDDALYEDLEAALLMADTGVKATEHLLQDLKRRVKDSKTTDPAAVKGLLVESLTSLLTPLQKPLLIGRFK
PTVIMVAGVNGAGKTTSIGKLTRHLATSNASVLLAAADTFRAAAREQLGVWADRTAVDIISQDGGDPAAVAFDAVSAGKA
RGRDVVLVDTAGRLPTQLHLMEELKKIKRVVQKTGPCNDNANLSSSTEASSLPPHEVLLVIDGNTGQNALTQVKAFDDAL
GLTGLIVTKLDGTAKGGVLAAIARERPIPVYFIGVGEKLEDLETFNAREFSQALLS
Nucleotide
Download Length: 1131 bp
>NTDB_id=84228 LDN84_RS19690 WP_223905139.1 4272134..4273264(+) (pilA) [Rhodoferax lithotrophicus strain MIZ03]
ATGTTCAGTTTTTTCAGAAAAAAATCCCCTCCTCCCGTCCAACCGACGGTTGTGGCACCACCTGCGCCGCAAGAACAACC
GGTGATCCGGCAAGAACCGACACCCGAACGCTTGCCCGAGACGAGTCGTGCGCCAGCATCCCCCCCGTCTGCGGCCAGCA
ACATGCCCGAAGCCGTGGCAACACCGGCCCGCAAATCCTGGATCGACAAACTCAAGGCGGGTTTGCGCAAAACCGGAGCC
AGCATCGCCACCGTCTTCACCGGCACACAAATTGACGATGCGCTGTACGAAGACCTGGAAGCCGCCTTGCTGATGGCCGA
CACCGGTGTCAAAGCCACCGAGCATTTGTTGCAAGACCTGAAACGCCGTGTCAAAGACAGCAAAACCACCGACCCCGCTG
CCGTCAAAGGCTTGCTGGTGGAATCGTTGACCAGCCTGCTCACGCCGCTGCAAAAGCCGCTGCTGATTGGCCGCTTCAAG
CCCACGGTGATCATGGTCGCCGGGGTTAATGGTGCGGGCAAAACCACATCCATTGGCAAGCTGACCCGCCATTTGGCCAC
CTCCAACGCCAGCGTGCTGCTGGCCGCCGCAGACACCTTCCGGGCTGCGGCACGTGAGCAACTCGGCGTGTGGGCGGATC
GCACGGCGGTCGACATCATCAGCCAGGACGGCGGGGACCCCGCTGCGGTGGCGTTTGATGCCGTCAGTGCTGGCAAGGCA
CGTGGGCGTGATGTGGTGCTGGTGGATACCGCCGGGCGCTTGCCAACCCAGTTACATTTGATGGAAGAGTTGAAAAAAAT
CAAGCGGGTGGTGCAAAAAACCGGCCCTTGCAATGACAACGCCAATCTCTCCAGCAGCACCGAGGCCAGCAGCCTGCCAC
CACATGAGGTGTTGCTGGTGATTGACGGCAACACCGGCCAGAACGCCCTGACCCAGGTCAAGGCCTTTGACGATGCACTG
GGCCTGACCGGCCTGATCGTTACCAAACTGGACGGTACCGCCAAGGGTGGCGTGCTGGCGGCGATTGCCCGTGAACGGCC
CATTCCGGTGTATTTCATTGGCGTGGGCGAAAAACTGGAAGACCTGGAAACCTTCAACGCCCGGGAGTTTTCCCAGGCGT
TGCTGTCCTGA
ATGTTCAGTTTTTTCAGAAAAAAATCCCCTCCTCCCGTCCAACCGACGGTTGTGGCACCACCTGCGCCGCAAGAACAACC
GGTGATCCGGCAAGAACCGACACCCGAACGCTTGCCCGAGACGAGTCGTGCGCCAGCATCCCCCCCGTCTGCGGCCAGCA
ACATGCCCGAAGCCGTGGCAACACCGGCCCGCAAATCCTGGATCGACAAACTCAAGGCGGGTTTGCGCAAAACCGGAGCC
AGCATCGCCACCGTCTTCACCGGCACACAAATTGACGATGCGCTGTACGAAGACCTGGAAGCCGCCTTGCTGATGGCCGA
CACCGGTGTCAAAGCCACCGAGCATTTGTTGCAAGACCTGAAACGCCGTGTCAAAGACAGCAAAACCACCGACCCCGCTG
CCGTCAAAGGCTTGCTGGTGGAATCGTTGACCAGCCTGCTCACGCCGCTGCAAAAGCCGCTGCTGATTGGCCGCTTCAAG
CCCACGGTGATCATGGTCGCCGGGGTTAATGGTGCGGGCAAAACCACATCCATTGGCAAGCTGACCCGCCATTTGGCCAC
CTCCAACGCCAGCGTGCTGCTGGCCGCCGCAGACACCTTCCGGGCTGCGGCACGTGAGCAACTCGGCGTGTGGGCGGATC
GCACGGCGGTCGACATCATCAGCCAGGACGGCGGGGACCCCGCTGCGGTGGCGTTTGATGCCGTCAGTGCTGGCAAGGCA
CGTGGGCGTGATGTGGTGCTGGTGGATACCGCCGGGCGCTTGCCAACCCAGTTACATTTGATGGAAGAGTTGAAAAAAAT
CAAGCGGGTGGTGCAAAAAACCGGCCCTTGCAATGACAACGCCAATCTCTCCAGCAGCACCGAGGCCAGCAGCCTGCCAC
CACATGAGGTGTTGCTGGTGATTGACGGCAACACCGGCCAGAACGCCCTGACCCAGGTCAAGGCCTTTGACGATGCACTG
GGCCTGACCGGCCTGATCGTTACCAAACTGGACGGTACCGCCAAGGGTGGCGTGCTGGCGGCGATTGCCCGTGAACGGCC
CATTCCGGTGTATTTCATTGGCGTGGGCGAAAAACTGGAAGACCTGGAAACCTTCAACGCCCGGGAGTTTTCCCAGGCGT
TGCTGTCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
52.432 |
98.404 |
0.516 |