Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QPK24_RS21315 Genome accession   NZ_CP127162
Coordinates   4419427..4420794 (-) Length   455 a.a.
NCBI ID   WP_160036580.1    Uniprot ID   -
Organism   Paenibacillus polygoni strain C31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4414427..4425794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK24_RS21290 (QPK24_21290) ispD 4414836..4415531 (-) 696 WP_285744504.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QPK24_RS21295 (QPK24_21295) - 4415605..4416693 (-) 1089 WP_285744505.1 PIN/TRAM domain-containing protein -
  QPK24_RS21300 (QPK24_21300) - 4416886..4417281 (+) 396 WP_285744506.1 DUF1573 domain-containing protein -
  QPK24_RS21305 (QPK24_21305) pssA 4417438..4418163 (-) 726 WP_160036582.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  QPK24_RS21310 (QPK24_21310) disA 4418336..4419412 (-) 1077 WP_191804472.1 DNA integrity scanning diadenylate cyclase DisA -
  QPK24_RS21315 (QPK24_21315) radA 4419427..4420794 (-) 1368 WP_160036580.1 DNA repair protein RadA Machinery gene
  QPK24_RS21320 (QPK24_21320) clpC 4420999..4423443 (-) 2445 WP_285744507.1 ATP-dependent protease ATP-binding subunit ClpC -
  QPK24_RS21325 (QPK24_21325) - 4423657..4424721 (-) 1065 WP_285744508.1 protein arginine kinase -
  QPK24_RS21330 (QPK24_21330) - 4424751..4425272 (-) 522 WP_285744509.1 UvrB/UvrC motif-containing protein -
  QPK24_RS21335 (QPK24_21335) - 4425324..4425785 (-) 462 WP_160036576.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49661.21 Da        Isoelectric Point: 6.4039

>NTDB_id=842210 QPK24_RS21315 WP_160036580.1 4419427..4420794(-) (radA) [Paenibacillus polygoni strain C31]
MAKVKTKFYCTECGYESPKWYGKCPGCQSWNSMVEETESIVKTQGRNSSLFDSKEKPLPIINIESDQEPRILTGIQELNR
VLGGGVVPGSLILVGGDPGIGKSTLLLQTSHAMTASGLRVLYISGEESVRQTKLRADRLEALSPDLYVLSETNMERIEEA
VSQVDPHFLVIDSIQTVFLPEITSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGSIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGESGLREVANPSEMFLSERPLGVAGSTVVASMEGTRPMLVELQALISATQFPS
PRRMATGVDYNRMALIIAVLEKRQGMFLQNQDAYLNVAGGVKLDEPATDLAMAVSIASSFRDLPTKPYDVIFGEVGLTGE
VRGVSRAEQRAKEAQKLGFKRVIMPEKSLKGWKHPVGIELIGINTVGDALAAALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=842210 QPK24_RS21315 WP_160036580.1 4419427..4420794(-) (radA) [Paenibacillus polygoni strain C31]
GTGGCTAAAGTAAAAACAAAGTTTTACTGTACAGAATGCGGTTATGAATCGCCGAAATGGTACGGTAAATGTCCAGGTTG
CCAGTCATGGAATTCCATGGTGGAGGAAACCGAAAGTATTGTGAAGACACAGGGGAGGAATTCTTCCCTTTTTGATAGTA
AAGAAAAACCGCTTCCTATCATAAATATAGAAAGTGACCAAGAACCGCGTATTCTAACTGGCATTCAGGAACTGAATCGA
GTACTTGGCGGAGGAGTAGTACCAGGTTCGTTGATTCTTGTTGGTGGGGATCCGGGTATTGGTAAATCAACGCTCTTGCT
CCAGACATCTCATGCCATGACAGCTTCAGGGCTGCGCGTATTGTATATTTCGGGTGAGGAATCGGTTAGACAAACCAAAC
TGAGAGCCGACCGGCTTGAAGCATTGTCTCCTGATTTATATGTTCTTAGTGAAACGAATATGGAACGGATCGAAGAGGCA
GTAAGTCAGGTTGATCCTCATTTTCTGGTGATTGACTCAATTCAGACTGTTTTTTTACCGGAAATAACAAGTGCTCCCGG
AAGTGTGGCACAGGTACGAGAATGTACATCACGGTTTATGCGGATTGCGAAAGGGTTAGGCATTGCAACGGTTCTGGTAG
GGCATGTTACTAAAGAGGGTTCGATTGCAGGTCCTCGAATGCTGGAACATATGGTGGATTGTGTGCTTTATTTTGAAGGA
GAACGTCATCATACGTATCGTTTGCTTCGTGCGGTAAAGAATCGTTTTGGTTCGACGAATGAAATTGGGATTTTCGAGAT
GGGAGAATCGGGCTTAAGAGAAGTGGCTAATCCATCAGAAATGTTCTTATCTGAGCGACCGCTAGGAGTGGCAGGTTCCA
CCGTTGTAGCGAGTATGGAAGGAACGCGTCCCATGCTTGTCGAACTTCAGGCACTGATCTCGGCTACGCAATTTCCATCA
CCTAGGCGAATGGCTACCGGCGTTGATTACAACCGTATGGCACTGATCATCGCCGTCCTTGAGAAGCGCCAAGGAATGTT
TCTCCAGAATCAAGATGCTTATCTCAATGTAGCTGGTGGAGTGAAACTGGATGAACCTGCAACCGATTTGGCTATGGCTG
TAAGTATTGCTTCCAGTTTTCGCGATTTGCCAACCAAACCCTATGATGTCATATTTGGAGAAGTAGGCTTGACTGGAGAA
GTGCGCGGTGTTTCAAGAGCGGAACAAAGAGCCAAAGAAGCGCAAAAACTTGGGTTTAAACGGGTAATTATGCCAGAGAA
GAGCTTAAAGGGGTGGAAGCATCCTGTTGGAATAGAACTGATCGGTATTAATACGGTCGGAGATGCACTAGCGGCTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.594

100

0.67
  radA Streptococcus mitis SK321

58.222

98.901

0.576
  radA Streptococcus pneumoniae Rx1

58.222

98.901

0.576
  radA Streptococcus pneumoniae D39

58.222

98.901

0.576
  radA Streptococcus pneumoniae R6

58.222

98.901

0.576
  radA Streptococcus pneumoniae TIGR4

58.222

98.901

0.576
  radA Streptococcus mitis NCTC 12261

58.222

98.901

0.576