Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LDN84_RS04305 Genome accession   NZ_AP024238
Coordinates   913649..914047 (+) Length   132 a.a.
NCBI ID   WP_223908895.1    Uniprot ID   -
Organism   Rhodoferax lithotrophicus strain MIZ03     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 908649..919047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN84_RS04280 (MIZ03_0906) dusB 908773..909822 (+) 1050 WP_223908879.1 tRNA dihydrouridine synthase DusB -
  LDN84_RS04285 (MIZ03_0907) - 909819..910055 (+) 237 WP_223908881.1 helix-turn-helix domain-containing protein -
  LDN84_RS04290 (MIZ03_0908) purH 910134..911729 (+) 1596 WP_223908884.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  LDN84_RS04295 (MIZ03_0909) hemL 911816..913129 (-) 1314 WP_223908886.1 glutamate-1-semialdehyde 2,1-aminomutase -
  LDN84_RS04300 (MIZ03_0910) - 913430..913582 (+) 153 WP_223912744.1 rubredoxin -
  LDN84_RS04305 (MIZ03_0911) pilG 913649..914047 (+) 399 WP_223908895.1 response regulator Regulator
  LDN84_RS04310 (MIZ03_0912) - 914047..914412 (+) 366 WP_276572417.1 response regulator -
  LDN84_RS04315 (MIZ03_0913) - 914426..914956 (+) 531 WP_223908897.1 chemotaxis protein CheW -
  LDN84_RS04320 (MIZ03_0914) - 914978..917287 (+) 2310 WP_223908903.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14441.77 Da        Isoelectric Point: 8.4803

>NTDB_id=84219 LDN84_RS04305 WP_223908895.1 913649..914047(+) (pilG) [Rhodoferax lithotrophicus strain MIZ03]
MSTTGSNLKILVVDDSNTIRRSAEIFLKAGKHEVVLAEDGFDALAKVSDYKPDLIFCDILMPRLDGYQTCAIIKRNAKFA
NVPVVMLSSKDGVFDKARGRMVGAQDYLTKPFTKDQLLKAVDQFGVAAQGVV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=84219 LDN84_RS04305 WP_223908895.1 913649..914047(+) (pilG) [Rhodoferax lithotrophicus strain MIZ03]
GTGAGTACAACTGGTTCGAATTTGAAAATTTTGGTGGTTGACGACAGCAACACCATCCGGCGTAGCGCCGAAATATTCCT
GAAGGCTGGCAAGCATGAGGTGGTGTTGGCCGAAGACGGGTTCGATGCATTGGCCAAAGTTAGTGACTACAAACCTGACC
TGATTTTTTGTGACATATTGATGCCCCGCTTGGACGGTTACCAGACATGCGCCATCATCAAGCGAAATGCCAAGTTTGCC
AATGTGCCGGTGGTCATGTTGTCGTCAAAAGATGGTGTGTTTGACAAGGCACGTGGCCGCATGGTCGGGGCGCAAGATTA
TTTAACCAAACCGTTTACCAAAGATCAGTTGCTCAAAGCGGTTGATCAGTTTGGCGTGGCGGCACAAGGAGTGGTGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.851

91.667

0.53

Multiple sequence alignment