NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	QO263_RS05205	Genome accession	NZ_CP127161
Coordinates	1110355..1111713 (+)	Length	452 a.a.
NCBI ID	WP_285627227.1	Uniprot ID	-
Organism	Proteiniborus sp. MB09-C3
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1105355..1116713

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QO263_RS05185 (QO263_05185)	-	1105578..1106036 (+)	459	WP_285627218.1	CtsR family transcriptional regulator	-
QO263_RS05190 (QO263_05190)	-	1106056..1106580 (+)	525	WP_285627221.1	UvrB/UvrC motif-containing protein	-
QO263_RS05195 (QO263_05195)	-	1106573..1107601 (+)	1029	WP_285627224.1	protein arginine kinase	-
QO263_RS05200 (QO263_05200)	-	1107619..1110045 (+)	2427	WP_285629206.1	ATP-dependent Clp protease ATP-binding subunit	-
QO263_RS05205 (QO263_05205)	radA	1110355..1111713 (+)	1359	WP_285627227.1	DNA repair protein RadA	Machinery gene
QO263_RS05210 (QO263_05210)	disA	1111722..1112801 (+)	1080	WP_285627230.1	DNA integrity scanning diadenylate cyclase DisA	-
QO263_RS05215 (QO263_05215)	-	1112845..1113240 (-)	396	WP_285627233.1	DUF1573 domain-containing protein	-
QO263_RS05220 (QO263_05220)	-	1113489..1113965 (+)	477	WP_285627236.1	CarD family transcriptional regulator	-
QO263_RS05225 (QO263_05225)	-	1114261..1115355 (+)	1095	WP_285629207.1	PIN/TRAM domain-containing protein	-
QO263_RS05230 (QO263_05230)	ispD	1115491..1116183 (+)	693	WP_285627240.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QO263_RS05235 (QO263_05235)	ndk	1116255..1116650 (+)	396	WP_285627242.1	nucleoside-diphosphate kinase	-

Sequence

Protein

Download Length: 452 a.a. Molecular weight: 49315.08 Da Isoelectric Point: 6.0287

                                >NTDB_id=842173 QO263_RS05205 WP_285627227.1 1110355..1111713(+) (radA) [Proteiniborus sp. MB09-C3]

MAKLKVKYICQECGYEAYKWLGKCPSCNEWNSFVEEVFDKASKVPSINVEAKIEKIVDIKTDEEFRTTTGLEELDRVLGG

GLVKGSLILVGGDPGIGKSTLLIQVANNISRMGLKVLYVSAEESARQIKLRSDRLSVQAKELYLLSETNMDIVTNAIDSL

NPDLLVIDSIQTVYSPSLESAPGSVSQVRETTATLMRLAKTRDMATFIVGHVTKEGSIAGPRVLEHMVDTVLYFEGERHH

TYRVLRGVKNRFGSTNEIGIFEMRDIGLIQVENPSEMLLAGRPLHTAGTIVVPSMEGTRPMLVEVQALVSHTAFGMPRRV

ATGIDYNRVVLMLAVLEKKAGLEMQSYDAYINIVGGIQIKEPAIDLGIVCALASSFKDREIDSKTIAIGEVGLTGELRTV

SFIEQRLKEASKLGFKTAVVPKSNLKGLGNIGDINVIGVTNIIDALDNVLGG

Nucleotide

Download Length: 1359 bp

                                >NTDB_id=842173 QO263_RS05205 WP_285627227.1 1110355..1111713(+) (radA) [Proteiniborus sp. MB09-C3]

ATGGCAAAGCTTAAGGTCAAATATATATGCCAGGAATGTGGATATGAGGCTTATAAATGGTTGGGAAAGTGTCCATCCTG

TAATGAATGGAACTCCTTTGTAGAAGAGGTATTTGATAAAGCTTCTAAGGTGCCTAGCATAAATGTAGAAGCTAAAATAG

AGAAGATTGTAGATATTAAAACCGATGAAGAGTTTAGGACTACAACAGGACTTGAAGAGCTGGATAGAGTCTTAGGCGGA

GGGTTAGTTAAAGGCTCACTCATTCTTGTAGGTGGAGATCCCGGAATAGGAAAATCAACACTTCTTATACAAGTTGCAAA

TAATATTTCTAGAATGGGTCTTAAGGTACTATATGTATCGGCGGAAGAGTCTGCAAGGCAGATTAAATTAAGATCGGATA

GACTTAGCGTACAGGCAAAGGAATTATATTTATTATCCGAAACTAATATGGATATTGTGACGAATGCAATTGACAGTTTA

AATCCTGATTTATTAGTGATTGACTCAATACAGACTGTATATAGTCCTAGCTTGGAGTCAGCACCAGGAAGTGTAAGTCA

GGTTAGAGAAACTACAGCTACATTGATGAGGCTAGCCAAAACTAGAGATATGGCAACATTTATTGTAGGTCATGTTACAA

AGGAAGGCTCAATAGCAGGACCAAGGGTTCTTGAGCATATGGTAGATACTGTTTTATATTTTGAGGGAGAAAGACACCAT

ACCTACAGAGTCTTAAGAGGAGTTAAAAACAGATTTGGGTCAACTAATGAAATAGGAATATTTGAGATGAGAGACATAGG

CCTTATTCAGGTTGAAAATCCTTCTGAGATGCTTCTGGCAGGCAGACCGCTCCATACAGCAGGGACCATAGTAGTTCCTA

GTATGGAAGGTACACGTCCTATGCTAGTGGAGGTTCAGGCATTAGTAAGCCATACCGCATTTGGAATGCCAAGAAGAGTA

GCTACAGGAATAGATTATAATAGAGTAGTTCTTATGCTTGCAGTATTAGAAAAAAAAGCTGGACTAGAAATGCAGAGCTA

CGATGCCTATATCAATATAGTAGGGGGAATTCAGATAAAAGAGCCTGCTATAGATTTAGGAATAGTATGTGCACTAGCAT

CTAGCTTTAAGGATAGAGAAATAGATTCTAAAACCATAGCAATAGGAGAAGTAGGACTAACAGGAGAATTGAGGACCGTA

AGCTTTATAGAGCAAAGATTAAAGGAAGCTAGTAAGCTTGGTTTTAAAACAGCAGTTGTTCCAAAATCTAATCTTAAAGG

ATTAGGCAATATCGGAGATATAAATGTGATAGGAGTAACAAACATTATCGATGCCTTAGATAATGTATTAGGAGGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(339-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-216)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	59.389	100	0.602
radA	Streptococcus mitis NCTC 12261	55.727	100	0.56
radA	Streptococcus mitis SK321	55.727	100	0.56
radA	Streptococcus pneumoniae Rx1	55.727	100	0.56
radA	Streptococcus pneumoniae D39	55.727	100	0.56
radA	Streptococcus pneumoniae R6	55.727	100	0.56
radA	Streptococcus pneumoniae TIGR4	55.727	100	0.56

Detailed information NTG0842173