Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VR480_RS06090 Genome accession   NZ_CP142792
Coordinates   1249520..1250035 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain SX48     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1244520..1255035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR480_RS06045 (VR480_06060) csrA 1245399..1245584 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  VR480_RS06075 (VR480_06090) yqaB 1246750..1247316 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  VR480_RS06080 (VR480_06095) yqaA 1247313..1247741 (+) 429 WP_001287454.1 YqaA family protein -
  VR480_RS06085 (VR480_06100) gshA 1247814..1249370 (+) 1557 WP_000611781.1 glutamate--cysteine ligase -
  VR480_RS06090 (VR480_06105) luxS 1249520..1250035 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  VR480_RS06095 (VR480_06110) emrB 1250099..1251637 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  VR480_RS06100 (VR480_06115) emrA 1251654..1252826 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  VR480_RS06105 (VR480_06120) emrR 1252953..1253483 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  VR480_RS06110 (VR480_06125) ygaH 1253574..1253909 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  VR480_RS06115 (VR480_06130) ygaZ 1253899..1254636 (-) 738 WP_000445648.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=842147 VR480_RS06090 WP_001130208.1 1249520..1250035(+) (luxS) [Escherichia coli strain SX48]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=842147 VR480_RS06090 WP_001130208.1 1249520..1250035(+) (luxS) [Escherichia coli strain SX48]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737