Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QN079_RS10305 Genome accession   NZ_CP127160
Coordinates   2110992..2112809 (-) Length   605 a.a.
NCBI ID   WP_016610833.1    Uniprot ID   -
Organism   Enterococcus sp. FZMF     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2105992..2117809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN079_RS10280 (QN079_10280) - 2106949..2107848 (-) 900 WP_074932946.1 RluA family pseudouridine synthase -
  QN079_RS10285 (QN079_10285) - 2107853..2108650 (-) 798 WP_026008090.1 NAD kinase -
  QN079_RS10290 (QN079_10290) - 2108656..2109324 (-) 669 WP_289229693.1 GTP pyrophosphokinase family protein -
  QN079_RS10295 (QN079_10295) - 2109521..2110096 (+) 576 WP_015509976.1 CYTH domain-containing protein -
  QN079_RS10300 (QN079_10300) - 2110205..2110861 (+) 657 WP_289229694.1 ClpXP adapter SpxH family protein -
  QN079_RS10305 (QN079_10305) pepF 2110992..2112809 (-) 1818 WP_016610833.1 oligoendopeptidase F Regulator
  QN079_RS10310 (QN079_10310) - 2112878..2113867 (-) 990 WP_289229695.1 competence protein CoiA family protein -
  QN079_RS10315 (QN079_10315) - 2113968..2114618 (-) 651 WP_005229698.1 adaptor protein MecA -
  QN079_RS10320 (QN079_10320) spxA 2114771..2115169 (-) 399 WP_003127030.1 transcriptional regulator SpxA -
  QN079_RS10325 (QN079_10325) - 2115879..2117615 (-) 1737 WP_289229696.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69094.68 Da        Isoelectric Point: 4.6993

>NTDB_id=842147 QN079_RS10305 WP_016610833.1 2110992..2112809(-) (pepF) [Enterococcus sp. FZMF]
MSETKQLPARESIPVEKTWDLTKIYADDAAFDIEFQEIQAQVKEASRYQGTLADGPQAFLSALEFVLALSRRLEKLYVYS
HLKNDQDTANTTYQGLYAKASNLVAQVSEAVAWFDPELLTMSDETIWGYFDQEPKLAVYRHMIEKTINERPHVLPAEQEA
LLAGAGEIFGAPGNIFSVLNNADLDFPVVEDENGEKVQLSHGVYGELMESTDRSVREAAFKGLYGVYEQFRNTFAQTLST
NIKAHNFKAKARKFDSARQAALSANHIPESVYDTLVDVVNQHLPLLHRYMALRKRLLAVDTLHMYDVYTPILGEAPIRYT
YEEAVEKAKEALKPLGEEYLAVVEEAFSNRWIDVVENKGKRSGAYSSGAYDTLPYILMNWNDRLDQLFTLVHEMGHSVHS
YFTRNNQPYAYGDYSIFLAEIASTTNENILTEYMLQTETDPRVKAYVLNHFLDGFKGTIFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSENYAELNAKYYGPSVEKDPEIRLEWSRIPHFYYNYYVYQYSTGFSAASALAKKILAGEPDALTNYLNYLKAG
RSDYPIEVMKKAGVDMTKADYIEDAMKVFEQRLNELEELVKEIEA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=842147 QN079_RS10305 WP_016610833.1 2110992..2112809(-) (pepF) [Enterococcus sp. FZMF]
ATGTCAGAAACAAAACAATTACCAGCACGTGAATCGATTCCAGTCGAAAAAACGTGGGACTTAACGAAAATCTATGCCGA
TGATGCGGCTTTTGACATAGAATTTCAAGAGATCCAAGCACAAGTCAAAGAAGCAAGTCGTTACCAAGGTACTTTAGCCG
ATGGGCCGCAAGCCTTCTTATCTGCATTAGAATTTGTTTTAGCGCTTTCTCGTCGTTTAGAGAAACTCTATGTATACAGT
CATTTGAAAAACGACCAAGATACTGCCAATACGACGTATCAAGGCTTGTATGCAAAAGCAAGTAACTTGGTTGCGCAAGT
AAGTGAAGCCGTTGCTTGGTTTGATCCTGAGCTATTGACAATGTCTGATGAAACGATTTGGGGCTATTTCGATCAAGAGC
CGAAACTAGCTGTTTATCGTCATATGATCGAAAAAACCATCAACGAGCGTCCACATGTCTTGCCAGCGGAGCAAGAAGCG
TTATTAGCCGGTGCTGGCGAAATTTTTGGGGCACCTGGCAACATTTTTTCTGTTTTAAACAATGCTGATTTGGATTTTCC
AGTAGTTGAAGACGAAAACGGGGAAAAAGTACAGTTATCTCATGGTGTATACGGTGAGTTGATGGAAAGCACGGATCGGT
CTGTCCGTGAAGCAGCCTTTAAAGGTCTTTATGGTGTCTATGAGCAATTCCGCAATACCTTTGCCCAAACATTAAGCACC
AATATCAAAGCCCATAACTTTAAAGCAAAAGCCCGCAAATTTGATTCGGCACGGCAAGCCGCTTTGAGTGCCAACCACAT
TCCTGAAAGTGTCTACGATACATTAGTGGATGTCGTCAATCAGCACCTGCCATTGTTGCATCGTTATATGGCATTAAGAA
AACGCCTGTTGGCTGTCGATACGTTGCATATGTATGATGTTTATACGCCGATTTTAGGGGAAGCACCCATTCGATATACC
TATGAAGAAGCGGTCGAAAAAGCGAAAGAAGCGTTAAAACCATTAGGTGAAGAATACCTTGCGGTGGTTGAAGAAGCCTT
CAGCAATCGGTGGATCGATGTCGTTGAAAACAAAGGCAAACGCAGTGGCGCGTATTCTTCTGGTGCCTATGATACGCTGC
CATATATCCTGATGAACTGGAATGATCGATTGGATCAACTCTTTACTCTTGTTCATGAAATGGGACACAGTGTGCATAGT
TACTTTACACGTAACAACCAGCCTTATGCCTATGGGGATTATTCGATCTTTTTAGCGGAAATCGCTTCAACCACCAATGA
AAATATTTTGACAGAGTATATGCTGCAGACTGAGACAGATCCACGGGTCAAAGCTTATGTCTTGAATCATTTTCTCGATG
GCTTCAAAGGAACGATTTTCCGTCAAACGCAATTTGCCGAGTTTGAACACTTCATGCACGTGGAAGATGCGAAAGGAACG
CCATTGACCAGTGAGTTCTTAAGCGAGAACTATGCCGAGTTAAATGCAAAATACTACGGACCTTCTGTTGAAAAAGATCC
TGAGATTCGTCTTGAGTGGTCACGCATTCCGCATTTCTATTACAATTACTATGTTTACCAGTATTCAACCGGATTTTCGG
CAGCTTCTGCTTTAGCGAAGAAAATCTTAGCAGGTGAACCAGATGCCTTAACCAACTATTTGAACTATTTGAAAGCTGGA
CGCAGTGATTATCCAATCGAAGTCATGAAAAAAGCGGGCGTCGATATGACAAAAGCAGATTATATTGAAGACGCGATGAA
AGTATTTGAGCAACGCTTGAATGAATTGGAAGAACTCGTCAAAGAAATTGAAGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.492

98.017

0.554