Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QN079_RS06285 Genome accession   NZ_CP127160
Coordinates   1303381..1305054 (+) Length   557 a.a.
NCBI ID   WP_270274023.1    Uniprot ID   -
Organism   Enterococcus sp. FZMF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1298381..1310054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN079_RS06255 (QN079_06255) - 1298701..1299552 (+) 852 WP_270274021.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  QN079_RS06260 (QN079_06260) xseA 1299553..1300905 (+) 1353 WP_270274022.1 exodeoxyribonuclease VII large subunit -
  QN079_RS06265 (QN079_06265) - 1300886..1301107 (+) 222 WP_005225774.1 exodeoxyribonuclease VII small subunit -
  QN079_RS06270 (QN079_06270) - 1301104..1302000 (+) 897 WP_081116532.1 polyprenyl synthetase family protein -
  QN079_RS06275 (QN079_06275) - 1301997..1302818 (+) 822 WP_005225776.1 TlyA family RNA methyltransferase -
  QN079_RS06280 (QN079_06280) argR 1302916..1303365 (+) 450 WP_005225777.1 arginine repressor -
  QN079_RS06285 (QN079_06285) recN 1303381..1305054 (+) 1674 WP_270274023.1 DNA repair protein RecN Machinery gene
  QN079_RS06290 (QN079_06290) - 1305150..1305881 (+) 732 WP_289230527.1 alpha/beta hydrolase -
  QN079_RS06295 (QN079_06295) - 1306282..1307136 (+) 855 WP_034868500.1 phosphate ABC transporter substrate-binding protein PstS -
  QN079_RS06300 (QN079_06300) pstC 1307234..1308154 (+) 921 WP_270274025.1 phosphate ABC transporter permease subunit PstC -
  QN079_RS06305 (QN079_06305) pstA 1308154..1309038 (+) 885 WP_005225782.1 phosphate ABC transporter permease PstA -
  QN079_RS06310 (QN079_06310) pstB 1309052..1309858 (+) 807 WP_005225783.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62619.70 Da        Isoelectric Point: 4.4984

>NTDB_id=842138 QN079_RS06285 WP_270274023.1 1303381..1305054(+) (recN) [Enterococcus sp. FZMF]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGAEKCRLEGIFEWPNQQEFKELT
ADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDDFKAELAS
YRQAYQAYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAS
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSEEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=842138 QN079_RS06285 WP_270274023.1 1303381..1305054(+) (recN) [Enterococcus sp. FZMF]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATCTCCAACCTGCACCTGTCTTTTCATGAGGGGATGACGGCTCT
AACAGGTGAAACAGGTGCTGGGAAATCAATCATTATCGATGCGATGGGCTTACTAGCAGGTGGCAGAGGATCCAGTGACT
ATTTGCGTCAAGGCGCAGAAAAATGCCGTTTGGAAGGGATTTTTGAATGGCCGAATCAGCAGGAGTTCAAAGAGCTGACC
GCAGATCTGGGTATTGATGAAGAGGAAGTTCTGATCGTACAACGGGATATCTCTCAATCGGGTAAAACTATTTGTCGTGT
AAATGGTCGAACCGTTACCTTGTCGGTTTTGCGCCAAATTGGCTTGTTTTTAGTTGATATTCAAGGACAAAATGAGCATC
AAGAGCTGCTGCAGCCAGAAAAACATTTGGCGTTGATGGATGGTTTTGGAGATGATGACTTTAAAGCAGAACTTGCAAGT
TACCGTCAAGCCTATCAAGCCTATCGCTCCTTAGAAAAACATGTGCGGACCATTCAAGAAAATGAGCAGCTCTATGTGCA
GCGAATGGACATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCGGAATTGATGGAAAATGAAGAAGAGCAGCTGATCG
ATGAACGAGAAAAACTGACCAATTATCAAAAAATCGTGGATGCTCTAGGGCAAAGCTATGGCGCTCTATCCGCCGAAGAA
GTTAATAGCCTAGATGGAGTCAGTGTGGCATTATCAGAGATCCAGTCGATCGCCCATCTTGATCCCGCGTATGAAAAAAT
CAGTGAAGCGATCCAAAGTGCGTATTACTTGTTGCAAGATGCAGCCACTGATATTTCGCGGCAAGTCGACAACCTTGAAT
TAGATGAAGGCCGACTAGAAGAAGTCATTTCACGGCTGGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAGTCAATT
CCTGTGATCCTTGCTTATTATGACGAGATCAGCAAAGAAATCAGCGAATCAGCCTATACGGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTTTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGACGTGAATTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAGCACGCGCAATTTGAAGTACGGTTTGCATCT
GGCTCAAAACAATTAAGCAGCAGCGGCTTTGATACCGTGGAGTTTTATTTGACAACCAACCCCGGTGAAGGCATGAAACC
GTTAGTACGAGTTGCTTCTGGAGGAGAGCTTTCCCGGATCTTATTAGCGCTTAAATCGATTTTCTCCCGCAAGCAAGGAA
TCACTAGTATTGTCTTTGATGAGGTGGATACTGGGGTCAGTGGCCGAGTAGCTCAGGCGATCGCCGAAAAAATCGCCAAG
ATCGCTGCGAATTCGCAAGTCTTGTGTATCACCCACTTGCCGCAAGTAGCGGCTGTGGCGGACAATCAATATTTTATCGA
AAAAGCAATACAAGAAGGTCGGACAGAAACCCATGTCCGTAAATTATCAGAAGAAGAACGAGTGGCTGAGATCGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACGATCGAACATGCACGAGAACTATTGGCGCTGGCTCACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.719

100

0.488