Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VR616_RS18295 Genome accession   NZ_CP142789
Coordinates   3814235..3814711 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain SX23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3809235..3819711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR616_RS18275 (VR616_18290) - 3809583..3812429 (+) 2847 WP_042096170.1 Ag43/Cah family autotransporter adhesin -
  VR616_RS18280 (VR616_18295) - 3812500..3812733 (+) 234 WP_001117568.1 DUF905 family protein -
  VR616_RS18285 (VR616_18300) - 3812824..3813642 (+) 819 WP_001234749.1 DUF932 domain-containing protein -
  VR616_RS18290 (VR616_18305) - 3813734..3814219 (+) 486 WP_042096390.1 antirestriction protein -
  VR616_RS18295 (VR616_18310) radC 3814235..3814711 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  VR616_RS18300 (VR616_18315) - 3814780..3815001 (+) 222 WP_000692346.1 DUF987 domain-containing protein -
  VR616_RS18305 (VR616_18320) - 3815075..3815443 (+) 369 WP_024174331.1 type IV toxin-antitoxin system YeeU family antitoxin -
  VR616_RS18310 (VR616_18325) - 3815533..3815910 (+) 378 WP_063090830.1 TA system toxin CbtA family protein -
  VR616_RS18315 (VR616_18330) - 3815907..3816395 (+) 489 WP_042096656.1 DUF5983 family protein -
  VR616_RS18320 (VR616_18335) - 3816407..3816604 (+) 198 WP_000838536.1 DUF957 domain-containing protein -
  VR616_RS18325 (VR616_18340) - 3816689..3817531 (+) 843 WP_042096658.1 DUF4942 domain-containing protein -
  VR616_RS18330 (VR616_18345) yghD 3817812..3818348 (-) 537 WP_000942795.1 GspM family type II secretion system protein YghD -
  VR616_RS18335 (VR616_18350) gspL 3818350..3819528 (-) 1179 WP_000094957.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=842093 VR616_RS18295 WP_001186725.1 3814235..3814711(+) (radC) [Escherichia coli strain SX23]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=842093 VR616_RS18295 WP_001186725.1 3814235..3814711(+) (radC) [Escherichia coli strain SX23]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGTC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399