Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QQX46_RS23640 Genome accession   NZ_CP127125
Coordinates   5082563..5083120 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA01_Control     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5077563..5088120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX46_RS23620 (QQX46_23625) pilR 5078839..5080176 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  QQX46_RS23625 (QQX46_23630) thiO 5080222..5081316 (-) 1095 WP_010895678.1 glycine oxidase ThiO -
  QQX46_RS23630 (QQX46_23635) - 5081451..5081960 (+) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  QQX46_RS23635 (QQX46_23640) - 5082066..5082572 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QQX46_RS23640 (QQX46_23645) pilV 5082563..5083120 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QQX46_RS23645 (QQX46_23650) pilW 5083117..5083941 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QQX46_RS23650 (QQX46_23655) pilX 5083938..5084525 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QQX46_RS23655 (QQX46_23660) pilY1 5084537..5088022 (+) 3486 WP_003115287.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=842061 QQX46_RS23640 WP_003119423.1 5082563..5083120(+) (pilV) [Pseudomonas aeruginosa strain PA01_Control]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=842061 QQX46_RS23640 WP_003119423.1 5082563..5083120(+) (pilV) [Pseudomonas aeruginosa strain PA01_Control]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995