Detailed information NTG0084205

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMG77_RS18495
• Genome accession: NZ_AP027165
• Coordinates: 3579630..3580622 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081574.1
• Uniprot ID: A0A096ZJU3
• Organism: Escherichia coli strain H19
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3574630..3585622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMG77_RS18470 (H19_3532)	ygbN	3575285..3576649 (+)	1365	WP_000104439.1	GntP family transporter	-
QMG77_RS18475 (H19_3533)	-	3576688..3576924 (-)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QMG77_RS18480 (H19_3534)	-	3576935..3578362 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QMG77_RS18485 (H19_3535)	-	3578362..3578955 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QMG77_RS18490 (H19_3536)	-	3579102..3579509 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
QMG77_RS18495 (H19_3537)	rpoS	3579630..3580622 (-)	993	WP_000081574.1	RNA polymerase sigma factor RpoS	Regulator
QMG77_RS18500 (H19_3538)	nlpD	3580685..3581779 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QMG77_RS18505 (H19_3539)	pcm	3581964..3582590 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QMG77_RS18510 (H19_3540)	surE	3582584..3583345 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QMG77_RS18515 (H19_3541)	truD	3583326..3584375 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
QMG77_RS18520 (H19_3542)	ispF	3584372..3584851 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMG77_RS18525 (H19_3543)	ispD	3584851..3585561 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37973.79 Da
• Isoelectric Point: 4.5597

>NTDB_id=84205 QMG77_RS18495 WP_000081574.1 3579630..3580622(-) (rpoS) [Escherichia coli strain H19]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLNRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=84205 QMG77_RS18495 WP_000081574.1 3579630..3580622(-) (rpoS) [Escherichia coli strain H19]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGAACCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A096ZJU3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712