Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QQX50_RS23390 Genome accession   NZ_CP127124
Coordinates   5039675..5040232 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA01_BIM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5034675..5045232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX50_RS23370 (QQX50_23370) pilR 5035951..5037288 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  QQX50_RS23375 (QQX50_23375) thiO 5037334..5038428 (-) 1095 WP_010895678.1 glycine oxidase ThiO -
  QQX50_RS23380 (QQX50_23380) - 5038563..5039072 (+) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  QQX50_RS23385 (QQX50_23385) - 5039178..5039684 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QQX50_RS23390 (QQX50_23390) pilV 5039675..5040232 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QQX50_RS23395 (QQX50_23395) pilW 5040229..5041053 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QQX50_RS23400 (QQX50_23400) pilX 5041050..5041637 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QQX50_RS23405 (QQX50_23405) pilY1 5041649..5045134 (+) 3486 WP_003115287.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=842026 QQX50_RS23390 WP_003119423.1 5039675..5040232(+) (pilV) [Pseudomonas aeruginosa strain PA01_BIM]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=842026 QQX50_RS23390 WP_003119423.1 5039675..5040232(+) (pilV) [Pseudomonas aeruginosa strain PA01_BIM]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995