Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QMG77_RS18185 Genome accession   NZ_AP027165
Coordinates   3522630..3523145 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain H19     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517630..3528145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG77_RS18160 (H19_3474) ygaZ 3518029..3518766 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  QMG77_RS18165 (H19_3475) ygaH 3518756..3519091 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QMG77_RS18170 (H19_3476) emrR 3519182..3519712 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QMG77_RS18175 (H19_3477) emrA 3519839..3521011 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QMG77_RS18180 (H19_3478) emrB 3521028..3522566 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QMG77_RS18185 (H19_3479) luxS 3522630..3523145 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  QMG77_RS18190 (H19_3480) gshA 3523295..3524851 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  QMG77_RS18195 (H19_3481) yqaA 3524924..3525352 (-) 429 WP_001287457.1 YqaA family protein -
  QMG77_RS18200 (H19_3482) yqaB 3525349..3525915 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QMG77_RS18230 (H19_3483) csrA 3527240..3527425 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=84202 QMG77_RS18185 WP_001130207.1 3522630..3523145(-) (luxS) [Escherichia coli strain H19]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=84202 QMG77_RS18185 WP_001130207.1 3522630..3523145(-) (luxS) [Escherichia coli strain H19]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731