Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QQX47_RS04225 Genome accession   NZ_CP127122
Coordinates   897927..898484 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Ned_5_BIM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 892927..903484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX47_RS04210 (QQX47_04210) pilY1 893025..896510 (-) 3486 WP_180361166.1 type 4a pilus biogenesis protein PilY1 -
  QQX47_RS04215 (QQX47_04215) pilX 896522..897109 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QQX47_RS04220 (QQX47_04220) pilW 897106..897930 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QQX47_RS04225 (QQX47_04225) pilV 897927..898484 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QQX47_RS04230 (QQX47_04230) - 898475..898981 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QQX47_RS04235 (QQX47_04235) - 899087..899596 (-) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  QQX47_RS04240 (QQX47_04240) thiO 899731..900825 (+) 1095 WP_031801325.1 glycine oxidase ThiO -
  QQX47_RS04245 (QQX47_04245) pilR 900871..902208 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=841939 QQX47_RS04225 WP_003119423.1 897927..898484(-) (pilV) [Pseudomonas aeruginosa strain Ned_5_BIM]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=841939 QQX47_RS04225 WP_003119423.1 897927..898484(-) (pilV) [Pseudomonas aeruginosa strain Ned_5_BIM]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTACTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995