Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   U9988_RS27520 Genome accession   NZ_CP142723
Coordinates   5857121..5857645 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain LXZ1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5852121..5862645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9988_RS27505 aroB 5853237..5854343 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  U9988_RS27510 aroK 5854393..5854911 (-) 519 WP_003095833.1 shikimate kinase AroK -
  U9988_RS27515 pilQ 5854923..5857067 (-) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  U9988_RS27520 comL/pilP 5857121..5857645 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  U9988_RS27525 pilO 5857642..5858265 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  U9988_RS27530 pilN 5858262..5858858 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  U9988_RS27535 pilM 5858858..5859922 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  U9988_RS27540 - 5860107..5862575 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=841937 U9988_RS27520 WP_003095836.1 5857121..5857645(-) (comL/pilP) [Pseudomonas aeruginosa strain LXZ1]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=841937 U9988_RS27520 WP_003095836.1 5857121..5857645(-) (comL/pilP) [Pseudomonas aeruginosa strain LXZ1]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362