Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   U9988_RS10970 Genome accession   NZ_CP142723
Coordinates   2276960..2277316 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain LXZ1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2271960..2282316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9988_RS10945 fabF 2272172..2273416 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  U9988_RS10950 pabC 2273416..2274231 (+) 816 WP_003113994.1 aminodeoxychorismate lyase -
  U9988_RS10955 mltG 2274237..2275286 (+) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  U9988_RS10960 tmk 2275315..2275947 (+) 633 WP_003091125.1 dTMP kinase -
  U9988_RS10965 - 2275940..2276926 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  U9988_RS10970 pilZ 2276960..2277316 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  U9988_RS10975 - 2277331..2278107 (+) 777 WP_003091117.1 TatD family hydrolase -
  U9988_RS10980 - 2278333..2279466 (-) 1134 WP_003118082.1 aminotransferase class V-fold PLP-dependent enzyme -
  U9988_RS10985 - 2279552..2280190 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  U9988_RS10990 - 2280357..2281253 (+) 897 WP_003091113.1 radical SAM protein -
  U9988_RS10995 - 2281318..2281950 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=841889 U9988_RS10970 WP_003091119.1 2276960..2277316(+) (pilZ) [Pseudomonas aeruginosa strain LXZ1]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=841889 U9988_RS10970 WP_003091119.1 2276960..2277316(+) (pilZ) [Pseudomonas aeruginosa strain LXZ1]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449