Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   U9988_RS10020 Genome accession   NZ_CP142723
Coordinates   2072533..2072862 (+) Length   109 a.a.
NCBI ID   WP_023116253.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LXZ1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2067533..2077862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9988_RS10005 - 2068333..2069289 (+) 957 WP_003104579.1 SDR family oxidoreductase -
  U9988_RS10010 - 2069291..2070310 (+) 1020 WP_003158833.1 glycosyltransferase family 4 protein -
  U9988_RS10015 - 2070345..2072342 (+) 1998 WP_023128731.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  U9988_RS10020 comEA/comE1 2072533..2072862 (+) 330 WP_023116253.1 ComEA family DNA-binding protein Machinery gene
  U9988_RS10030 - 2073079..2074275 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  U9988_RS10035 uvrB 2074463..2076475 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11427.41 Da        Isoelectric Point: 8.0374

>NTDB_id=841881 U9988_RS10020 WP_023116253.1 2072533..2072862(+) (comEA/comE1) [Pseudomonas aeruginosa strain LXZ1]
MHLIKSALLLILFACLPFSAYAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=841881 U9988_RS10020 WP_023116253.1 2072533..2072862(+) (comEA/comE1) [Pseudomonas aeruginosa strain LXZ1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTACGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385