Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   U9988_RS02075 Genome accession   NZ_CP142723
Coordinates   444226..444591 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain LXZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439226..449591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9988_RS02045 pyrR 439848..440360 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  U9988_RS02050 ruvX 440472..440906 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  U9988_RS02055 - 440906..441475 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  U9988_RS02060 - 441524..442417 (-) 894 WP_003084580.1 TonB family protein -
  U9988_RS02065 gshB 442564..443517 (-) 954 WP_003100943.1 glutathione synthase -
  U9988_RS02070 pilG 443772..444179 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  U9988_RS02075 pilH 444226..444591 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  U9988_RS02080 - 444642..445178 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  U9988_RS02085 pilJ 445263..447311 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  U9988_RS02090 pilK 447372..448247 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=841864 U9988_RS02075 WP_003084587.1 444226..444591(+) (pilH) [Pseudomonas aeruginosa strain LXZ1]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=841864 U9988_RS02075 WP_003084587.1 444226..444591(+) (pilH) [Pseudomonas aeruginosa strain LXZ1]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364