Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QQZ06_RS03925 Genome accession   NZ_CP127101
Coordinates   868756..869472 (-) Length   238 a.a.
NCBI ID   WP_100006618.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain 10916-77753     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 863756..874472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQZ06_RS03900 (QQZ06_03900) - 864809..864923 (-) 115 Protein_763 ribose transporter RbsU -
  QQZ06_RS03905 (QQZ06_03905) - 865260..865499 (+) 240 WP_285592194.1 LacI family DNA-binding transcriptional regulator -
  QQZ06_RS03910 (QQZ06_03910) - 865468..866208 (+) 741 WP_285592196.1 trehalose repressor -
  QQZ06_RS03915 (QQZ06_03915) - 866264..867748 (+) 1485 WP_100006620.1 sucrose-6-phosphate hydrolase -
  QQZ06_RS03920 (QQZ06_03920) - 867752..868696 (+) 945 WP_100006619.1 carbohydrate kinase -
  QQZ06_RS03925 (QQZ06_03925) agrA 868756..869472 (-) 717 WP_100006618.1 quorum-sensing response regulator AgrA Regulator
  QQZ06_RS03930 (QQZ06_03930) agrC 869486..870778 (-) 1293 WP_063285005.1 quorum-sensing sensor histidine kinase AgrC -
  QQZ06_RS03935 (QQZ06_03935) agrD 870801..870938 (-) 138 WP_020219911.1 cyclic lactone autoinducer peptide AgrD -
  QQZ06_RS03940 (QQZ06_03940) - 870940..871506 (-) 567 WP_020219910.1 accessory gene regulator AgrB -
  QQZ06_RS03945 (QQZ06_03945) - 872263..873066 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28016.18 Da        Isoelectric Point: 5.4368

>NTDB_id=841809 QQZ06_RS03925 WP_100006618.1 868756..869472(-) (agrA) [Staphylococcus pseudintermedius strain 10916-77753]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDEVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=841809 QQZ06_RS03925 WP_100006618.1 868756..869472(-) (agrA) [Staphylococcus pseudintermedius strain 10916-77753]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGAAGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTACTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.773

100

0.828