Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QQZ05_RS11490 Genome accession   NZ_CP127100
Coordinates   2427984..2429354 (-) Length   456 a.a.
NCBI ID   WP_015728606.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain 6127-64107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2422984..2434354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQZ05_RS11465 (QQZ05_11465) cysE 2423149..2423814 (-) 666 WP_172425792.1 serine O-acetyltransferase -
  QQZ05_RS11470 (QQZ05_11470) gltX 2424202..2425656 (-) 1455 WP_037543943.1 glutamate--tRNA ligase -
  QQZ05_RS11475 (QQZ05_11475) ispF 2425733..2426212 (-) 480 WP_096540454.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QQZ05_RS11480 (QQZ05_11480) ispD 2426205..2426903 (-) 699 WP_099986823.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QQZ05_RS11485 (QQZ05_11485) - 2426904..2427965 (-) 1062 WP_110179157.1 PIN/TRAM domain-containing protein -
  QQZ05_RS11490 (QQZ05_11490) radA 2427984..2429354 (-) 1371 WP_015728606.1 DNA repair protein RadA Machinery gene
  QQZ05_RS11495 (QQZ05_11495) - 2429747..2430493 (-) 747 WP_015728605.1 ABC transporter permease -
  QQZ05_RS11500 (QQZ05_11500) - 2430480..2431184 (-) 705 WP_014614771.1 ABC transporter ATP-binding protein -
  QQZ05_RS11505 (QQZ05_11505) - 2431199..2432158 (-) 960 WP_225549892.1 hypothetical protein -
  QQZ05_RS11510 (QQZ05_11510) - 2432158..2432970 (-) 813 WP_037543946.1 SagB family peptide dehydrogenase -
  QQZ05_RS11515 (QQZ05_11515) - 2432990..2434210 (-) 1221 WP_014614774.1 YcaO-like family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50028.50 Da        Isoelectric Point: 7.0051

>NTDB_id=841796 QQZ05_RS11490 WP_015728606.1 2427984..2429354(-) (radA) [Staphylococcus pseudintermedius strain 6127-64107]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLDDIKQELAPRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGFDCYIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWHFPEGIEVIGVTSVNEALKYALKN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=841796 QQZ05_RS11490 WP_015728606.1 2427984..2429354(-) (radA) [Staphylococcus pseudintermedius strain 6127-64107]
GTGGCAAAAACGAAAACAATTTTTGAATGTACGGCCTGTGGTTATCAATCGCCTAAATGGATGGGGAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAACAAAAAACTGCGAGTCCTAAACACGGTGTACGGGCGCAAAAAACAA
GTTCAGCAAAAATACAAAAGCTCGATGACATTAAACAAGAGCTTGCGCCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGAATAGGGAAGTCCACATTGTT
ACTTCAAATGTGCGCGGCTTTATCTAAAGAGAAAAGGGTGCTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCGGATCGTTTGGATGAAGATGCGAGTCAACTCAACGTGTTTGCGGAAACGGACTTAATGGTTATTCATGAAGCG
GTGAAAAAGGTCGAACCTGATTTAATTGTAGTGGACTCTATTCAGACGATCTACCATCCCGAAATCAGTTCGGCGCCTGG
CTCTGTATCTCAAGTTCGTGAAAGTACACAAAGCTTGATGCACATCGCTAAACAAATGAATGTTGCGACGTTTATTGTAG
GCCATGTGACGAAAGAAGGCCAAATCGCGGGGCCGCGTTTACTTGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCATGCGTATCGTATTTTAAGAGCGGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAAT
GAAACAGTCAGGTTTAAAAAGCGTGCTTAACCCGTCAGAAATGTTTTTAGAAGAACGGACGACCAATGTTGCAGGTTCGA
CAATTGTCGCAACGATGGAAGGGACACGACCATTGTTAATTGAAGTACAAGCGCTTGTCACACCGACGACGTTCAATAAT
CCGAGACGTATGGCGACAGGTATTGACCATAATCGCCTCAGTTTGTTAATGGCGGTGTTAGAGAAAAAAGAAGGTTATTT
ATTACAACAACAAGATGCTTACATTAAGGTGGCAGGGGGCGTCAAACTCTCTGAACCTGCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGACGGCTTCGATTGTTATATTGGCGAGGTTGGATTGACTGGTGAG
GTCCGCCGTGTTTCGCGCATTGAGCAACGTGTGCAAGAAGCAGCAAAATTGGGCTTTAAACGTGTGATTATCCCTAAAAA
CAATATTGGCGGATGGCACTTTCCAGAAGGTATTGAAGTGATTGGCGTGACTTCTGTCAATGAAGCATTGAAATACGCAT
TAAAAAATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.658
  radA Streptococcus pneumoniae Rx1

58.628

99.123

0.581
  radA Streptococcus pneumoniae D39

58.628

99.123

0.581
  radA Streptococcus pneumoniae R6

58.628

99.123

0.581
  radA Streptococcus pneumoniae TIGR4

58.628

99.123

0.581
  radA Streptococcus mitis NCTC 12261

58.628

99.123

0.581
  radA Streptococcus mitis SK321

58.628

99.123

0.581