Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   QQZ05_RS00190 Genome accession   NZ_CP127100
Coordinates   41215..42843 (-) Length   542 a.a.
NCBI ID   WP_016170668.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain 6127-64107     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36215..47843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQZ05_RS00160 (QQZ05_00160) - 36368..37924 (+) 1557 WP_285328279.1 type I restriction-modification system subunit M -
  QQZ05_RS00165 (QQZ05_00165) - 37917..39098 (+) 1182 WP_285534299.1 restriction endonuclease subunit S -
  QQZ05_RS00170 (QQZ05_00170) - 39205..39426 (-) 222 WP_285328275.1 hypothetical protein -
  QQZ05_RS00175 (QQZ05_00175) - 39441..39950 (-) 510 WP_285328274.1 DUF1643 domain-containing protein -
  QQZ05_RS00180 (QQZ05_00180) - 39966..40277 (-) 312 WP_016170671.1 DUF960 family protein -
  QQZ05_RS00185 (QQZ05_00185) - 40364..40714 (-) 351 WP_016170669.1 SAUGI family uracil-DNA glycosylase inhibitor -
  QQZ05_RS00190 (QQZ05_00190) ccrB 41215..42843 (-) 1629 WP_016170668.1 recombinase family protein Machinery gene
  QQZ05_RS00195 (QQZ05_00195) ccrA 42840..44201 (-) 1362 WP_016170667.1 recombinase family protein Machinery gene
  QQZ05_RS00200 (QQZ05_00200) - 44501..46183 (-) 1683 Protein_37 DUF927 domain-containing protein -
  QQZ05_RS00205 (QQZ05_00205) - 46183..46479 (-) 297 WP_025176264.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62405.78 Da        Isoelectric Point: 9.7442

>NTDB_id=841767 QQZ05_RS00190 WP_016170668.1 41215..42843(-) (ccrB) [Staphylococcus pseudintermedius strain 6127-64107]
MKQLKKKRIGLYARVSTEMQTDGYSIQGQLNQLTEYCQFQGYEVVDEYTDRGISGKTMQRPELQRMLKDANEGKLDCIMV
YKTNRLARNTSDLLNIVEELYKINVEFFSLTEKIEIASSTGKLMLQILASFAEFERNTIVENVYNGQRQRAIEGYYQGNL
PLGYDKVPDSKKELMINQHEANIVKYIFKSYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAKY
RHWSDKRRKGLNEEPIIADGKHAPIIDKALWDKVQFKRQESRKKPQVHGKGTNLLTGIVKCPKCGAAMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQILEIIKSKKVLKQLVEKVNKKSQIDVSSLNHDIAYKQSQCEE
IKAKMHTLTKTIEDSPDLDSVLKPTILSYQDELNQINNQIHQLEQDKQAEAPHYDADMIANVLQAIFKDIDKLEKSQLKS
LYLTVIDRIDIRKHEHHKKQFYVTLKLNNDIIKQLFDNHPLDEVLLSTSSLFLSQTLYITIE

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=841767 QQZ05_RS00190 WP_016170668.1 41215..42843(-) (ccrB) [Staphylococcus pseudintermedius strain 6127-64107]
ATGAAACAACTCAAAAAGAAACGTATTGGATTATACGCACGTGTATCAACTGAAATGCAAACGGATGGTTACAGTATTCA
AGGTCAATTAAACCAACTTACAGAGTATTGTCAATTTCAAGGATATGAAGTCGTTGATGAATATACCGATCGAGGTATAT
CGGGTAAAACAATGCAACGTCCAGAATTACAACGTATGTTAAAAGATGCCAACGAAGGTAAATTAGATTGTATTATGGTC
TACAAAACCAATCGTTTAGCTAGAAATACCTCAGATTTGTTAAATATTGTCGAGGAATTGTATAAGATTAATGTCGAATT
TTTTAGTCTCACTGAAAAAATAGAAATTGCCAGCTCCACAGGTAAGTTGATGCTCCAAATTTTAGCCAGCTTCGCAGAAT
TTGAAAGAAATACGATTGTAGAGAATGTCTACAATGGCCAAAGACAACGTGCGATTGAAGGTTATTATCAAGGTAATTTG
CCTCTAGGCTATGATAAAGTACCTGATAGTAAAAAAGAGCTCATGATTAATCAACATGAAGCGAATATTGTTAAATATAT
CTTTAAGTCATACGCCAAAGGTCATGGTTATCGTAAGATTGCGAACGCATTGAATCATAAAGGTTATGTGACTAAGAAAG
GGAAACCGTTTAGTATTTCATCCATTACTTATATCATCTCAAACCCTTTTTATATTGGAAAGATACAGTTTGCGAAGTAT
AGACACTGGAGCGATAAGAGACGAAAAGGACTCAATGAGGAACCCATTATTGCTGATGGTAAGCATGCACCTATTATTGA
TAAAGCTTTATGGGATAAAGTACAGTTTAAACGCCAAGAGAGTCGCAAGAAACCTCAAGTTCATGGTAAAGGGACCAATC
TACTGACTGGAATTGTAAAGTGCCCAAAATGTGGTGCAGCCATGGCGGCAAGTAATACAACCAATACGTTAAAAGATGGC
ACTAAGAAAAGAATCAGATATTACTCATGTAGTAATTTTAGAAACAAAGGTTCTAAAGTATGTTCAGCCAATAGTGTTAG
AGCAGATGTATTAGAAAAATATGTTATGGATCAGATATTGGAAATTATCAAAAGTAAAAAGGTATTGAAACAATTGGTTG
AAAAGGTAAATAAAAAAAGTCAAATAGACGTCTCTTCTTTGAATCATGATATTGCCTATAAACAGTCACAATGTGAAGAA
ATAAAAGCCAAAATGCATACACTAACGAAAACCATCGAAGACTCACCTGACTTAGATAGCGTATTGAAACCAACAATACT
TAGCTACCAAGATGAATTGAATCAAATAAATAATCAAATACATCAACTAGAACAAGATAAACAAGCAGAAGCTCCACATT
ATGATGCTGATATGATTGCCAACGTACTACAAGCAATATTCAAAGATATAGACAAATTAGAGAAATCTCAGTTGAAATCA
CTCTATCTGACAGTTATCGATCGTATTGATATCCGAAAACATGAACATCATAAGAAGCAATTTTATGTTACGCTCAAATT
GAATAACGATATTATTAAACAACTATTTGATAATCATCCACTTGACGAAGTGCTCCTTAGCACTTCGTCTTTATTTTTGT
CCCAAACTTTATATATAACTATTGAATAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(11-154)

Ogr/Delta-like zinc finger (Ogr_Delta)

(300-355)

Recombinase (Recombinase)

(179-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

72.694

100

0.727