Detailed information NTG0841754

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: QQO14_RS11180
• Genome accession: NZ_CP127096
• Coordinates: 2275521..2276885 (-)
• Length: 454 a.a.
• NCBI ID: WP_053017886.1
• Uniprot ID: A0A5B2YWR4
• Organism: Staphylococcus haemolyticus strain M1691_10
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2277037..2278716	2275521..2276885	flank	152

Gene organization within MGE regions

Location: 2275521..2278716

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQO14_RS11180	radA	2275521..2276885 (-)	1365	WP_053017886.1	DNA repair protein RadA	Machinery gene
QQO14_RS11185	-	2277037..2278716 (-)	1680	WP_285490442.1	IS1182 family transposase	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49842.14 Da
• Isoelectric Point: 6.9552

>NTDB_id=841754 QQO14_RS11180 WP_053017886.1 2275521..2276885(-) (radA) [Staphylococcus haemolyticus strain M1691_10]
MAKKKVIFECMACGYQSPKWMGKCPNCGSWNQMEEIVEKASNPKHGVKTSTSSAKVQKLNDIKNEVTPRVQTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLDEDSSNLNVLAETDLEVIHQTVQ
QAQPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFERVIIPQTNIGGWQFPEGIKVVGVSTVHDALKYAFKS

Nucleotide

• Length: 1365 bp

>NTDB_id=841754 QQO14_RS11180 WP_053017886.1 2275521..2276885(-) (radA) [Staphylococcus haemolyticus strain M1691_10]
TTGGCCAAAAAGAAAGTAATTTTTGAGTGTATGGCTTGCGGCTATCAATCTCCAAAATGGATGGGAAAGTGTCCTAATTG
TGGGTCATGGAATCAAATGGAGGAAATTGTTGAAAAAGCTTCAAATCCTAAACACGGCGTAAAGACATCAACGTCTAGTG
CAAAAGTCCAGAAATTAAATGATATCAAGAATGAAGTGACACCGAGAGTTCAGACAGAATCAAAAGAGTTCAACCGCGTT
TTAGGCGGTGGCATTGTAAGTGGTTCTTTAGTGTTAATAGGTGGAGATCCTGGTATTGGTAAATCAACGTTATTACTGCA
AATTTGTGCATCATTGTCACAAAAATTAAATGTACTGTATATTACAGGTGAAGAATCACTAAATCAAACTAAATTACGTG
CCGATCGACTAGATGAAGATTCGAGTAATTTAAATGTGTTAGCAGAAACAGATTTAGAGGTAATACATCAAACAGTTCAA
CAAGCACAACCTGATATTTTAGTTGTGGATTCTATTCAAACAATATATCATCCTGAAATTAGTTCGGCACCTGGTTCTGT
GTCTCAAGTTAGAGAGAGTACACAGAGTTTAATGAATATTGCTAAACAAATGAATATTGCAACATTTATCGTCGGACATG
TTACAAAAGAAGGTCAAATTGCAGGACCGCGTCTATTAGAACATATGGTTGATACTGTACTGTACTTTGAGGGAGATGAG
CATCATGCTTATCGTATCTTGAGAGCGGTTAAGAACCGTTTTGGTTCTACTAATGAAATGGGCATTTTTGAAATGAAACA
AAGCGGATTAAAAGGCGTTCAAAATCCTTCTGAAATGTTCTTAGAGGAACGTTCTACCAATGTACCGGGATCAACGATTG
TAGCAACTATGGAAGGCACACGACCTCTATTAATAGAAGTTCAGGCCTTAGTGACGCCTACAACATTTAATAACCCTAGA
CGTATGGCAACAGGTATAGATCATAATCGTTTGAGTTTATTAATGGCTGTATTAGAGAAAAAAGAAAACTATTTATTACA
ACAACAAGATGCATATATTAAAGTAGCTGGTGGCGTTCGATTGACAGAGCCGGCAGTTGATTTAAGTGTTATAGTAGCAA
CAGCTTCAAGTTTTAAAGATAAAGCGGTAGATGGGCTTGATTGTTATATTGGAGAAGTAGGTTTGACCGGTGAAGTGAGA
CGTGTTTCTCGAATTGAACAACGTGTTCAAGAAGCAGCTAAATTAGGCTTTGAACGTGTTATTATTCCACAGACAAATAT
CGGTGGATGGCAATTTCCTGAAGGCATTAAAGTAGTAGGAGTGTCTACAGTACATGATGCACTAAAATATGCATTCAAAT
CGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (67-218)

• Subunit ChlI of Mg-chelatase (ChlI) (359-426)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

3D structure

• AlphaFold DB: A0A5B2YWR4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	65.427	100	0.659
radA	Streptococcus pneumoniae Rx1	60.177	99.559	0.599
radA	Streptococcus pneumoniae D39	60.177	99.559	0.599
radA	Streptococcus pneumoniae R6	60.177	99.559	0.599
radA	Streptococcus pneumoniae TIGR4	60.177	99.559	0.599
radA	Streptococcus mitis NCTC 12261	60.177	99.559	0.599
radA	Streptococcus mitis SK321	60.177	99.559	0.599