Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QQO14_RS04735 Genome accession   NZ_CP127096
Coordinates   957863..958579 (-) Length   238 a.a.
NCBI ID   WP_285491420.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain M1691_10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 952863..963579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQO14_RS04715 - 952903..954147 (+) 1245 WP_285491413.1 ammonium transporter -
  QQO14_RS04720 - 954248..955207 (+) 960 WP_285491415.1 LacI family DNA-binding transcriptional regulator -
  QQO14_RS04725 - 955292..956776 (+) 1485 WP_285491417.1 sucrose-6-phosphate hydrolase -
  QQO14_RS04730 - 956780..957742 (+) 963 WP_285491418.1 carbohydrate kinase -
  QQO14_RS04735 agrA 957863..958579 (-) 717 WP_285491420.1 quorum-sensing response regulator AgrA Regulator
  QQO14_RS04740 agrC 958598..959881 (-) 1284 WP_285491422.1 quorum-sensing sensor histidine kinase AgrC -
  QQO14_RS04745 agrD 959908..960048 (-) 141 WP_053017473.1 cyclic lactone autoinducer peptide AgrD -
  QQO14_RS04750 - 960051..960617 (-) 567 WP_285491424.1 accessory gene regulator AgrB -
  QQO14_RS04755 - 961346..962131 (-) 786 WP_285491426.1 carbon-nitrogen family hydrolase -
  QQO14_RS04760 - 962324..962949 (-) 626 Protein_935 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27831.77 Da        Isoelectric Point: 5.2189

>NTDB_id=841734 QQO14_RS04735 WP_285491420.1 957863..958579(-) (agrA) [Staphylococcus haemolyticus strain M1691_10]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEVIEKSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPSQLQSRIIDCLETAHTRLKLLSKESTVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIINFKNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=841734 QQO14_RS04735 WP_285491420.1 957863..958579(-) (agrA) [Staphylococcus haemolyticus strain M1691_10]
ATGAAAATATTCATTTGTGAAGATGATGTAAAACAACGCGAAAATATGGTTTCAATTATTAATAATTACATTATGATTGA
AGAAAAACCTATGGAGATTGCGCTTGCAACAGACGATCCTTATGAAGTCATTGAAAAATCTAAAGAGATGAATGATGTCG
GATGTTACTTTCTAGATATTCAATTAGAGGCTGATATCAACGGTATTAAATTAGGTAGTGAAATTCGTAAGTATGACCCT
ATTGGAAATATCATATTCGTTACAAGTCATAGTGAGTTAACGTACCTAACCTTTGTTTACAAAGTGTCAGCAATGGATTT
TATCTTTAAAGATGATCCAAGCCAATTACAGTCAAGAATTATTGATTGCTTAGAAACTGCACACACTCGCTTAAAATTAT
TATCTAAAGAAAGTACTGTTGAGACGATTGAATTGAAACGAGGAAGTAATTCAATTTATGTTCAATATGATGACGTAATG
TTTTTCGAATCATCTACAAAATCACATCGATTAATCGCGCATTTAGATAATCGTCAAATTGAGTTCTATGGCAATTTAAA
AGAACTTGCACAACTTGATGAGCGGTTCTTTAGATGTCACAACAGCTTCGTTGTTAATAGACATAATATTGAATCCATAG
ATTCAAAAGAACGTATTATCAATTTTAAAAACGGTGAGCACTGTTATGCTTCAGTTCGTAATGTCAAAAAAATATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878