Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   QQO14_RS00235 Genome accession   NZ_CP127096
Coordinates   52639..53997 (-) Length   452 a.a.
NCBI ID   WP_285490580.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain M1691_10     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 43435..58468 52639..53997 within 0


Gene organization within MGE regions


Location: 43435..58468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQO14_RS00185 - 44822..45196 (+) 375 Protein_34 4Fe-4S single cluster domain-containing protein -
  QQO14_RS00190 - 45400..46782 (+) 1383 WP_182703536.1 MDR family MFS transporter -
  QQO14_RS00195 - 46862..47821 (+) 960 WP_285490577.1 amidohydrolase family protein -
  QQO14_RS00200 - 47953..48651 (-) 699 WP_107636088.1 hypothetical protein -
  QQO14_RS00205 - 48629..48787 (+) 159 Protein_38 hypothetical protein -
  QQO14_RS00210 - 49018..49239 (-) 222 WP_107525800.1 hypothetical protein -
  QQO14_RS00215 - 49254..49747 (-) 494 Protein_40 DUF1643 domain-containing protein -
  QQO14_RS00220 - 49765..50076 (-) 312 WP_285490578.1 DUF960 family protein -
  QQO14_RS00225 - 50163..50513 (-) 351 WP_285490579.1 SAUGI family uracil-DNA glycosylase inhibitor -
  QQO14_RS00230 - 51014..52642 (-) 1629 Protein_43 recombinase family protein -
  QQO14_RS00235 ccrA 52639..53997 (-) 1359 WP_285490580.1 recombinase family protein Machinery gene
  QQO14_RS00240 - 54183..55949 (-) 1767 WP_285490581.1 DUF927 domain-containing protein -
  QQO14_RS00245 - 55949..56098 (-) 150 WP_182703541.1 hypothetical protein -
  QQO14_RS00250 - 56280..57272 (-) 993 WP_285490582.1 hypothetical protein -
  QQO14_RS00255 - 57404..57625 (+) 222 WP_285491691.1 GNAT family N-acetyltransferase -
  QQO14_RS00260 - 58121..58468 (-) 348 WP_285490583.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 52946.81 Da        Isoelectric Point: 9.9242

>NTDB_id=841726 QQO14_RS00235 WP_285490580.1 52639..53997(-) (ccrA) [Staphylococcus haemolyticus strain M1691_10]
MEKAIAYVRQSTLKQQSLATQKPLIMETAKQYGWSNVTFYDDKKTGRHTKRSGYQKMVEVITSGECKILCCYRLNRLHRN
LKNAIQFFEICKKHHVTIISVNDGYFDLSKEFDCFRLNILMSLAEMESNNISKQTKNGIREKAKQGKLITTHAPFGYRYR
RGHFVVQEEAYTVKAVYSLYLQGLGYKKISQHLDNHPKLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPSIIDVDTF
EESQERRIHKQHNRSNSRNKLKRRIKCPYCQSTLTNLTIKKEKHSLRYYVCPKNMNDAYRTCPFKGINAQMIETEVLNTC
KAYCNNQSFHDKLNETILKALKQQQMKHRQSHLTQEQLIEKLAQNQIDIETFKRLSTSSESEERYSNYSPNQITEATRHV
IKNKLTLEDIATLIDDIIITQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=841726 QQO14_RS00235 WP_285490580.1 52639..53997(-) (ccrA) [Staphylococcus haemolyticus strain M1691_10]
ATGGAAAAAGCGATTGCTTATGTACGTCAAAGTACACTCAAACAACAAAGCTTGGCTACTCAAAAACCGCTCATTATGGA
GACCGCTAAGCAATATGGATGGTCTAATGTGACGTTTTATGATGATAAGAAAACAGGTCGACATACAAAACGTTCAGGCT
ATCAAAAAATGGTAGAAGTGATTACATCTGGAGAATGTAAAATATTATGTTGCTATCGTCTAAATCGGCTCCATCGTAAT
TTGAAAAATGCCATACAATTCTTTGAAATTTGTAAAAAGCATCACGTCACAATCATCAGTGTTAACGATGGATATTTTGA
TTTGTCTAAAGAGTTTGATTGCTTTCGCTTGAACATACTTATGAGTCTAGCAGAAATGGAATCAAACAATATCAGCAAAC
AAACAAAAAATGGGATAAGAGAAAAAGCCAAACAAGGTAAGCTAATCACAACTCATGCACCTTTTGGCTATCGTTATAGA
CGAGGTCATTTTGTTGTACAAGAAGAAGCGTATACAGTCAAAGCAGTTTATAGCTTGTACTTACAAGGTCTAGGCTACAA
AAAGATTTCCCAACATTTAGATAACCATCCTAAGCTTATTCCACGTAAGCCCTATCAAGTTAGAAATATTCTCTTGAACC
CTAACTATTGTGGTCGTGTCATCAATAAGTATGGCACGTTTAATGATATAGTTCCGTCTATTATTGATGTTGATACGTTT
GAAGAATCACAAGAGCGTCGTATTCATAAACAACACAATCGATCCAATTCTAGAAATAAGCTAAAGCGACGAATCAAATG
CCCTTACTGTCAATCAACATTAACAAACTTAACGATAAAAAAAGAGAAACACTCTCTACGTTACTACGTTTGTCCTAAAA
ATATGAATGACGCTTATCGTACATGCCCATTTAAAGGTATCAATGCGCAAATGATTGAAACAGAGGTCCTCAACACTTGT
AAAGCATATTGTAACAATCAGTCATTTCATGACAAATTAAATGAGACAATACTAAAAGCGCTAAAACAACAACAAATGAA
ACACAGACAATCACATCTAACACAAGAACAACTCATCGAAAAATTAGCACAAAATCAAATTGATATAGAAACATTTAAAC
GGTTATCTACTAGCTCTGAAAGTGAAGAACGTTACTCTAATTATTCACCTAATCAAATTACTGAAGCAACCCGTCATGTC
ATCAAAAATAAATTGACATTAGAAGATATAGCCACTTTGATTGATGACATTATAATAACTCAAACTAAACAATTACAAGG
AATCTACTTTAAAAATAGTCCACTCAATATCGTTGAACAATCTCATTTAATAACTCCTGAAAGGAATGAAGTCATATGA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(168-247)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(261-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

55.079

98.009

0.54
  ccrA Staphylococcus aureus N315

51.693

98.009

0.507