Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QMC72_RS19220 Genome accession   NZ_CP127095
Coordinates   3799232..3799810 (-) Length   192 a.a.
NCBI ID   WP_003239439.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3794232..3804810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS19190 (QMC72_19190) - 3794736..3795359 (-) 624 WP_003239430.1 TVP38/TMEM64 family protein -
  QMC72_RS19195 (QMC72_19195) - 3795513..3795875 (+) 363 WP_232920210.1 hypothetical protein -
  QMC72_RS19200 (QMC72_19200) - 3796093..3796293 (+) 201 WP_019257983.1 DUF3311 domain-containing protein -
  QMC72_RS19205 (QMC72_19205) - 3796290..3797759 (+) 1470 WP_284106727.1 sodium:solute symporter -
  QMC72_RS19210 (QMC72_19210) - 3797802..3798071 (-) 270 WP_019713871.1 excalibur calcium-binding domain-containing protein -
  QMC72_RS19215 (QMC72_19215) - 3798287..3799186 (+) 900 WP_133488029.1 SDR family oxidoreductase -
  QMC72_RS19220 (QMC72_19220) comK 3799232..3799810 (-) 579 WP_003239439.1 competence transcription factor ComK Regulator
  QMC72_RS19225 (QMC72_19225) - 3800103..3800336 (+) 234 WP_003239440.1 IDEAL domain-containing protein -
  QMC72_RS19230 (QMC72_19230) - 3800363..3801220 (-) 858 WP_003239442.1 SDR family oxidoreductase -
  QMC72_RS19235 (QMC72_19235) - 3801332..3802861 (+) 1530 WP_284106728.1 FAD-dependent oxidoreductase -
  QMC72_RS19240 (QMC72_19240) hemAT 3803001..3804299 (+) 1299 WP_133488033.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22442.72 Da        Isoelectric Point: 7.7153

>NTDB_id=841714 QMC72_RS19220 WP_003239439.1 3799232..3799810(-) (comK) [Bacillus inaquosorum strain LBA001]
MSQKTDAPLESYEVNGATIAVLPEEIDGKIYSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=841714 QMC72_RS19220 WP_003239439.1 3799232..3799810(-) (comK) [Bacillus inaquosorum strain LBA001]
ATGAGTCAGAAAACTGACGCACCTTTAGAATCGTATGAAGTAAACGGCGCAACAATTGCTGTGCTGCCAGAAGAAATCGA
CGGCAAAATCTATTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGGTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAACGGCAAAACGATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAAAACCAGGTTTACCGGACAGCATGGCTCAGAACCAAATTCCAGGACAGAATCGAACAC
CGCGTGCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTTGGAGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

97.396

100

0.974