Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   QMC72_RS16945 Genome accession   NZ_CP127095
Coordinates   3398086..3398550 (+) Length   154 a.a.
NCBI ID   WP_003238939.1    Uniprot ID   A0A9W5LHE5
Organism   Bacillus inaquosorum strain LBA001     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3393086..3403550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS16925 (QMC72_16925) fadH 3394274..3395038 (-) 765 WP_284106603.1 2,4-dienoyl-CoA reductase -
  QMC72_RS16930 (QMC72_16930) - 3395181..3396041 (+) 861 WP_133487629.1 metallophosphoesterase -
  QMC72_RS16935 (QMC72_16935) - 3396098..3396592 (+) 495 WP_080030847.1 L,D-transpeptidase family protein -
  QMC72_RS16940 (QMC72_16940) - 3396668..3397960 (+) 1293 WP_133487631.1 MFS transporter -
  QMC72_RS16945 (QMC72_16945) kre 3398086..3398550 (+) 465 WP_003238939.1 YkyB family protein Regulator
  QMC72_RS16950 (QMC72_16950) cheV 3398593..3399504 (-) 912 WP_133487633.1 chemotaxis protein CheV -
  QMC72_RS16955 (QMC72_16955) - 3399710..3399871 (+) 162 WP_003238943.1 hypothetical protein -
  QMC72_RS16960 (QMC72_16960) - 3400073..3401254 (+) 1182 WP_003238945.1 aminotransferase A -
  QMC72_RS16965 (QMC72_16965) kinA 3401251..3403083 (-) 1833 WP_133487635.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17904.72 Da        Isoelectric Point: 10.3545

>NTDB_id=841702 QMC72_RS16945 WP_003238939.1 3398086..3398550(+) (kre) [Bacillus inaquosorum strain LBA001]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAHMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=841702 QMC72_RS16945 WP_003238939.1 3398086..3398550(+) (kre) [Bacillus inaquosorum strain LBA001]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCATATGTCTTTAACAAAAGCAAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAACCGCTTGTGC
CAAATCGCCAGCAGCCAGCTTATCATAAACCTGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

99.351

100

0.994