Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QMC72_RS16720 Genome accession   NZ_CP127095
Coordinates   3358241..3358519 (-) Length   92 a.a.
NCBI ID   WP_003238863.1    Uniprot ID   A0A9Q4EYY4
Organism   Bacillus inaquosorum strain LBA001     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3353241..3363519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS16700 (QMC72_16700) ade 3353291..3355024 (-) 1734 WP_133487594.1 adenine deaminase -
  QMC72_RS16705 (QMC72_16705) ktrC 3355182..3355847 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  QMC72_RS16710 (QMC72_16710) - 3355919..3356746 (-) 828 WP_133487596.1 gamma-glutamylcyclotransferase -
  QMC72_RS16715 (QMC72_16715) kinC 3356762..3358048 (-) 1287 WP_133487598.1 two-component sensor histidine kinase KinC -
  QMC72_RS16720 (QMC72_16720) abrB 3358241..3358519 (-) 279 WP_003238863.1 transcriptional regulator AbhA Regulator
  QMC72_RS16725 (QMC72_16725) mreBH 3358802..3359809 (+) 1008 WP_029316824.1 cell shape-determining protein MreBH -
  QMC72_RS16730 (QMC72_16730) - 3359910..3360044 (+) 135 WP_003238865.1 protein YkpC -
  QMC72_RS16735 (QMC72_16735) - 3360156..3361388 (+) 1233 WP_133487600.1 aminopeptidase -
  QMC72_RS16740 (QMC72_16740) - 3361417..3362328 (-) 912 WP_133487602.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=841700 QMC72_RS16720 WP_003238863.1 3358241..3358519(-) (abrB) [Bacillus inaquosorum strain LBA001]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSDNKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=841700 QMC72_RS16720 WP_003238863.1 3358241..3358519(-) (abrB) [Bacillus inaquosorum strain LBA001]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGTCGTATTGTTATGCCGATAGAATTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGTATTGAATTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGTGTTT
GTTTAATGACCGGAGAAATCACTTCAGATAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCAGAAGGTGCACAG
CTGCTTCTTGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.341

98.913

0.587