Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QMC72_RS15880 Genome accession   NZ_CP127095
Coordinates   3191350..3192243 (-) Length   297 a.a.
NCBI ID   WP_133487478.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3186350..3197243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS15865 (QMC72_15865) xerC 3186725..3187639 (-) 915 WP_003238557.1 tyrosine recombinase XerC -
  QMC72_RS15870 (QMC72_15870) trmFO 3187707..3189014 (-) 1308 WP_133487477.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QMC72_RS15875 (QMC72_15875) topA 3189090..3191165 (-) 2076 WP_003238559.1 type I DNA topoisomerase -
  QMC72_RS15880 (QMC72_15880) dprA 3191350..3192243 (-) 894 WP_133487478.1 DNA-processing protein DprA Machinery gene
  QMC72_RS15885 (QMC72_15885) sucD 3192304..3193206 (-) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  QMC72_RS15890 (QMC72_15890) sucC 3193235..3194392 (-) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  QMC72_RS15895 (QMC72_15895) - 3194566..3194847 (-) 282 WP_003220834.1 FlhB-like flagellar biosynthesis protein -
  QMC72_RS15900 (QMC72_15900) - 3194844..3196574 (-) 1731 WP_284106573.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32864.22 Da        Isoelectric Point: 9.7255

>NTDB_id=841699 QMC72_RS15880 WP_133487478.1 3191350..3192243(-) (dprA) [Bacillus inaquosorum strain LBA001]
MDQAAACLMICRINQLLSPSLLLKWWKADPSMSLTSPVFETVTHGKVKAAALKNKIEEHYPKLQRVLAAYHEQGINIIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGIQVVNHLTKELCRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPATKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLITA
DQAMEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSADDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=841699 QMC72_RS15880 WP_133487478.1 3191350..3192243(-) (dprA) [Bacillus inaquosorum strain LBA001]
TTGGATCAGGCCGCTGCCTGTTTAATGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCTATGTCGCTGACATCGCCCGTGTTCGAAACTGTTACTCACGGTAAAGTAAAAGCAGCTGCATTAAAAA
ACAAAATAGAAGAACATTACCCAAAACTTCAGCGTGTACTTGCTGCTTACCATGAGCAAGGCATTAACATCATCCCGATT
TCTTCAAAGCAATATCCTTTCTGGCTGAAAACCATTTATGATCCCCCCGCTGTCCTGTTTGCAAAGGGTGATATGACCCT
TCTTTCTAAAGGGAGGAAAATTGGAATTGTAGGTACAAGAAATCCAACAGCGTATGGTATACAAGTTGTCAACCATCTTA
CAAAAGAGCTTTGCCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGAATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATCGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGGGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTTCTGTCAGAGCATCCACCAGCAACCAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGATTAAGTGAAGGCATTATTGTCGTGCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCA
GACCAAGCAATGGAACAAGGGAGAGAAGTTTTTGCCGTACCCGGTTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ACTAATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGATGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

92.256

100

0.923
  dprA Lactococcus lactis subsp. cremoris KW2

41.353

89.562

0.37