Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QMC72_RS05730 Genome accession   NZ_CP127095
Coordinates   1040498..1041610 (-) Length   370 a.a.
NCBI ID   WP_019257226.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1035498..1046610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS05715 (QMC72_05715) gyrA 1035590..1038055 (-) 2466 WP_133485207.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  QMC72_RS05720 (QMC72_05720) gyrB 1038265..1040181 (-) 1917 WP_003236659.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QMC72_RS05725 (QMC72_05725) remB 1040235..1040480 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  QMC72_RS05730 (QMC72_05730) recF 1040498..1041610 (-) 1113 WP_019257226.1 DNA replication/repair protein RecF Machinery gene
  QMC72_RS05735 (QMC72_05735) rlbA 1041626..1041841 (-) 216 WP_003236655.1 ribosome maturation protein RlbA -
  QMC72_RS05740 (QMC72_05740) dnaN 1041973..1043109 (-) 1137 WP_225515371.1 DNA polymerase III subunit beta -
  QMC72_RS05745 (QMC72_05745) dnaA 1043298..1044638 (-) 1341 WP_003236652.1 chromosomal replication initiator protein DnaA -
  QMC72_RS05750 (QMC72_05750) rpmH 1045265..1045399 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  QMC72_RS05755 (QMC72_05755) rnpA 1045552..1045902 (+) 351 WP_284107434.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42360.36 Da        Isoelectric Point: 7.0881

>NTDB_id=841670 QMC72_RS05730 WP_019257226.1 1040498..1041610(-) (recF) [Bacillus inaquosorum strain LBA001]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=841670 QMC72_RS05730 WP_019257226.1 1040498..1041610(-) (recF) [Bacillus inaquosorum strain LBA001]
TTGTATATCCAGAACTTAGAGCTGACATCTTACCGCAACTACGACCATGCCGAACTGCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAAACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATCATGTTTGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCTGTTTACCTGTATGACCTTTCTCTTTACCAGAAAATCCTTTCTCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACGATGCTCGATGTTTTGACCGATCAGCTTGTGGA
AGTTGCGGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACTGCACAGCTCGAAAAATGGGCGCAGCCAATTCATGCGGGCA
TCTCAAGAGGGTTAGAAGAGCTGACCCTAAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATCGAGCGCGGTGTTACGCTGTCAGGGCCTCATCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCATTGT
CCCTTAAGCTGGCGGAAATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAGCTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.189

100

0.992