Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QMC72_RS02860 Genome accession   NZ_CP127095
Coordinates   538362..539129 (+) Length   255 a.a.
NCBI ID   WP_133486911.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 533362..544129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS02830 (QMC72_02830) pgpH 533660..535795 (+) 2136 WP_080429034.1 cyclic-di-AMP phosphodiesterase PgpH -
  QMC72_RS02835 (QMC72_02835) ybeY 535796..536269 (+) 474 WP_003237071.1 rRNA maturation RNase YbeY -
  QMC72_RS02840 (QMC72_02840) - 536250..536621 (+) 372 WP_133486909.1 diacylglycerol kinase family protein -
  QMC72_RS02845 (QMC72_02845) - 536742..537152 (+) 411 WP_003237067.1 cytidine deaminase -
  QMC72_RS02850 (QMC72_02850) era 537133..538038 (+) 906 WP_003226207.1 GTPase Era -
  QMC72_RS02855 (QMC72_02855) - 538182..538325 (+) 144 WP_003230053.1 YqzL family protein -
  QMC72_RS02860 (QMC72_02860) recO 538362..539129 (+) 768 WP_133486911.1 DNA repair protein RecO Machinery gene
  QMC72_RS02865 (QMC72_02865) glyQ 539427..540314 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  QMC72_RS02870 (QMC72_02870) glyS 540307..542346 (+) 2040 WP_133486913.1 glycine--tRNA ligase subunit beta -
  QMC72_RS02875 (QMC72_02875) ccpN 542480..543118 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  QMC72_RS02880 (QMC72_02880) - 543144..543956 (+) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29372.16 Da        Isoelectric Point: 8.5618

>NTDB_id=841657 QMC72_RS02860 WP_133486911.1 538362..539129(+) (recO) [Bacillus inaquosorum strain LBA001]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPFLFEFILESFKQLNEGTDPDVIIFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGTVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=841657 QMC72_RS02860 WP_133486911.1 538362..539129(+) (recO) [Bacillus inaquosorum strain LBA001]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAACGATTACGGAGAGACGAATAAAATCGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCAAGAGGCGCCAAAAAACCGAACAGTCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAAAAAACAACGGGCCTCGGAACGCTTCAGCAGGGTGAAATGATACTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCGTATATTGCTGAGCTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTTCTTGTTTGAATTCATTTTAGAATCGTTTAAACAGCTGAATGAAGGAACAGATCCGGATGTCATCATCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCTGAGCTGAATCACTGTGTGCATTGTAAAAGCCAGGACGGG
ACATTTCATTTCTCTGTCCGTGATAACGGGTTTATTTGCCATCGCTGTTTTGAAAAAGATCCTTACAGGATTCCGATTAA
ACCGCAAACGGCAAGGCTGTTGAGGCTGTTTTATTACTTCGATCTGTCGAGGCTGGGCACTGTGTCCTTAAAACAGGAAA
CAAAAGCTGAATTGAAGCAAGTGATTGATTTATATTATGAGGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

97.255

100

0.973