Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QMC72_RS02605 Genome accession   NZ_CP127095
Coordinates   495166..495576 (+) Length   136 a.a.
NCBI ID   WP_133486879.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 490166..500576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS02575 (QMC72_02575) - 490240..491028 (+) 789 WP_166638365.1 SDR family NAD(P)-dependent oxidoreductase -
  QMC72_RS02580 (QMC72_02580) - 491047..491991 (+) 945 WP_133486877.1 sugar phosphate isomerase/epimerase -
  QMC72_RS02585 (QMC72_02585) - 492071..493501 (+) 1431 WP_133487318.1 sugar porter family MFS transporter -
  QMC72_RS02590 (QMC72_02590) - 493800..493978 (+) 179 Protein_502 hypothetical protein -
  QMC72_RS02595 (QMC72_02595) - 493936..494131 (+) 196 Protein_503 recombinase family protein -
  QMC72_RS02600 (QMC72_02600) sigK 494243..494971 (-) 729 WP_003237137.1 RNA polymerase sporulation sigma factor SigK -
  QMC72_RS02605 (QMC72_02605) nucA/comI 495166..495576 (+) 411 WP_133486879.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QMC72_RS02610 (QMC72_02610) - 495609..496331 (-) 723 WP_284107356.1 DUF308 domain-containing protein -
  QMC72_RS02615 (QMC72_02615) gnd 496645..497538 (+) 894 WP_148982003.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QMC72_RS02620 (QMC72_02620) - 497557..498183 (-) 627 WP_003237129.1 TVP38/TMEM64 family protein -
  QMC72_RS02625 (QMC72_02625) - 498378..499130 (+) 753 WP_284107355.1 N-acetylmuramoyl-L-alanine amidase -
  QMC72_RS02630 (QMC72_02630) - 499383..500114 (+) 732 WP_284107354.1 SGNH/GDSL hydrolase family protein -
  QMC72_RS02635 (QMC72_02635) - 500190..500321 (+) 132 WP_284107353.1 hypothetical protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15020.08 Da        Isoelectric Point: 5.7516

>NTDB_id=841653 QMC72_RS02605 WP_133486879.1 495166..495576(+) (nucA/comI) [Bacillus inaquosorum strain LBA001]
MKKWMAGLLLAAVVFLCLVVPQPIKSASLYDKVLYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSGYPDGTRVRFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=841653 QMC72_RS02605 WP_133486879.1 495166..495576(+) (nucA/comI) [Bacillus inaquosorum strain LBA001]
ATGAAAAAATGGATGGCAGGCTTGCTTCTTGCTGCAGTAGTTTTTCTTTGTTTAGTGGTTCCGCAGCCGATCAAGAGCGC
TTCTTTGTATGACAAAGTGTTGTATTTTCCGCTGTCTCGTTATCCGGAAACAGGGGATCATATTAGAGATGCGATAGCAG
AGGGACATTCTGATATTTGTACCATCGACAGGGATGGAGCGGACAAAAGGCGAGAGGAATCATTAAAAGGAATTCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCAATGGCGGTTTGCGAGGAAGGCGGCGCAGGAGCTGACGTCCGATATGTAAC
GCCTTCTGATAATCGTGGGGCCGGCTCGTGGGTAGGGAATCAAATGAGTGGTTATCCTGACGGCACCAGAGTGCGGTTTA
TTGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529