Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VR553_RS09205 Genome accession   NZ_CP142680
Coordinates   1904833..1905309 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain FG31-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1899833..1910309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR553_RS09165 (VR553_09150) dacD 1900007..1901173 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  VR553_RS09170 (VR553_09155) sbmC 1901292..1901765 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  VR553_RS09175 (VR553_09160) yeeA 1901963..1903021 (+) 1059 WP_001200890.1 FUSC family protein -
  VR553_RS09180 (VR553_09165) tmaR 1903193..1903522 (+) 330 WP_000450409.1 DUF496 family protein -
  VR553_RS09185 - 1903623..1903757 (-) 135 WP_001297944.1 EutP/PduV family microcompartment system protein -
  VR553_RS09190 (VR553_09170) cbtA 1903759..1904012 (-) 254 Protein_1797 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  VR553_RS09195 (VR553_09175) cbeA 1904101..1904469 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  VR553_RS09200 (VR553_09180) yeeT 1904549..1904770 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  VR553_RS09205 (VR553_09185) radC 1904833..1905309 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  VR553_RS09210 (VR553_09190) - 1905325..1905804 (-) 480 WP_000860076.1 antirestriction protein -
  VR553_RS09215 (VR553_09195) - 1905886..1906707 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  VR553_RS09220 (VR553_09200) - 1906928..1907338 (-) 411 WP_000846713.1 hypothetical protein -
  VR553_RS09225 (VR553_09205) - 1907354..1908037 (-) 684 WP_000775500.1 hypothetical protein -
  VR553_RS09230 (VR553_09210) - 1908173..1909243 (-) 1071 WP_000102644.1 patatin-like phospholipase family protein -
  VR553_RS09235 (VR553_09215) - 1909240..1910145 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=841653 VR553_RS09205 WP_001186774.1 1904833..1905309(-) (radC) [Escherichia coli strain FG31-1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=841653 VR553_RS09205 WP_001186774.1 1904833..1905309(-) (radC) [Escherichia coli strain FG31-1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399