Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QMC72_RS01540 Genome accession   NZ_CP127095
Coordinates   303647..304393 (+) Length   248 a.a.
NCBI ID   WP_133486579.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298647..309393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS01525 (QMC72_01525) - 298872..299063 (-) 192 WP_003222590.1 hypothetical protein -
  QMC72_RS01530 (QMC72_01530) valS 299511..302153 (+) 2643 WP_133486575.1 valine--tRNA ligase -
  QMC72_RS01535 (QMC72_01535) - 302213..303505 (+) 1293 WP_133486577.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QMC72_RS01540 (QMC72_01540) comC 303647..304393 (+) 747 WP_133486579.1 A24 family peptidase Machinery gene
  QMC72_RS01545 (QMC72_01545) - 304527..305525 (+) 999 WP_284106969.1 SPOR domain-containing protein -
  QMC72_RS01550 (QMC72_01550) - 305677..306246 (+) 570 WP_003237578.1 Maf family nucleotide pyrophosphatase -
  QMC72_RS01555 (QMC72_01555) radC 306283..306978 (+) 696 WP_003237576.1 DNA repair protein RadC -
  QMC72_RS01560 (QMC72_01560) mreB 307070..308083 (+) 1014 WP_003237574.1 cell shape-determining protein MreB -
  QMC72_RS01565 (QMC72_01565) mreC 308114..308986 (+) 873 WP_003237571.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26391.03 Da        Isoelectric Point: 9.7944

>NTDB_id=841649 QMC72_RS01540 WP_133486579.1 303647..304393(+) (comC) [Bacillus inaquosorum strain LBA001]
MLPILFILGLILGSFYYTAGCRIPLHISIITPRSACSFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPVAELVTA
CLFAAAGIRFGPSPELFPALVFISLLIIVAVTDIHFMLIPNRILIFFVPVLAAARLISPLDSWYAGLLGAAAGFLFLALI
AAITHGGIGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=841649 QMC72_RS01540 WP_133486579.1 303647..304393(+) (comC) [Bacillus inaquosorum strain LBA001]
ATGCTTCCCATTCTCTTTATCCTCGGGCTTATCCTTGGTTCATTTTATTATACGGCCGGGTGCCGTATCCCCTTACATAT
ATCCATTATCACGCCCCGTTCGGCATGCTCGTTTTGCCGGCGGACATTAACCCCGGCAGAATTAATCCCCATCCTGTCAT
TCCTTTTCCAAAAAGGCAAATGTAAAAGCTGCGGGCACAGAATTTCTTTTATGTATCCTGTGGCAGAGCTTGTGACAGCG
TGTTTATTTGCGGCAGCAGGAATACGCTTTGGCCCGTCTCCGGAACTGTTTCCCGCTCTCGTGTTTATCTCTCTTCTCAT
CATCGTTGCAGTGACAGATATTCATTTTATGCTGATACCAAATCGGATATTAATTTTCTTTGTTCCCGTTTTGGCCGCTG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGCCGGTCTGTTAGGTGCGGCCGCCGGATTTCTATTCCTGGCCTTAATT
GCCGCAATCACCCATGGGGGAATAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTACTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAGCTGTCCTGACTGGAAGACTCGCCA
AAAGACAGCCGCTTCCCTTTGCCCCCGCAATTGCTGCAGGGAGCATTTTAGCTTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(100-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

94.355

100

0.944