Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QQO15_RS12505 Genome accession   NZ_CP127094
Coordinates   2563296..2564666 (-) Length   456 a.a.
NCBI ID   WP_014614769.1    Uniprot ID   A0A166QVY3
Organism   Staphylococcus pseudintermedius strain 19KM0990     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2558296..2569666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQO15_RS12480 (QQO15_12480) cysE 2558461..2559126 (-) 666 WP_172425792.1 serine O-acetyltransferase -
  QQO15_RS12485 (QQO15_12485) gltX 2559514..2560968 (-) 1455 WP_190320806.1 glutamate--tRNA ligase -
  QQO15_RS12490 (QQO15_12490) ispF 2561045..2561524 (-) 480 WP_014614766.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QQO15_RS12495 (QQO15_12495) ispD 2561517..2562215 (-) 699 WP_190320805.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QQO15_RS12500 (QQO15_12500) - 2562216..2563277 (-) 1062 WP_096548221.1 PIN/TRAM domain-containing protein -
  QQO15_RS12505 (QQO15_12505) radA 2563296..2564666 (-) 1371 WP_014614769.1 DNA repair protein RadA Machinery gene
  QQO15_RS12510 (QQO15_12510) - 2565053..2565799 (-) 747 WP_015728605.1 ABC transporter permease -
  QQO15_RS12515 (QQO15_12515) - 2565786..2566490 (-) 705 WP_014614771.1 ABC transporter ATP-binding protein -
  QQO15_RS12520 (QQO15_12520) - 2566505..2567464 (-) 960 WP_099986825.1 hypothetical protein -
  QQO15_RS12525 (QQO15_12525) - 2567464..2568276 (-) 813 WP_037543946.1 SagB family peptide dehydrogenase -
  QQO15_RS12530 (QQO15_12530) - 2568296..2569516 (-) 1221 WP_105503322.1 YcaO-like family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49994.48 Da        Isoelectric Point: 7.0051

>NTDB_id=841641 QQO15_RS12505 WP_014614769.1 2563296..2564666(-) (radA) [Staphylococcus pseudintermedius strain 19KM0990]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLDDIKQELAPRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGLDCYIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWHFPEGIEVIGVTSVNEALKYALKN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=841641 QQO15_RS12505 WP_014614769.1 2563296..2564666(-) (radA) [Staphylococcus pseudintermedius strain 19KM0990]
GTGGCAAAAACGAAAACAATTTTTGAATGTACGGCCTGTGGTTATCAATCGCCTAAATGGATGGGGAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAGCAAAAAACTGCGAGTCCTAAACACGGTGTACGAGCGCAAAAAACAA
GTTCAGCAAAAATACAAAAGCTCGATGACATTAAACAAGAGCTTGCGCCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGAATAGGGAAGTCGACACTGTT
ATTGCAAATGTGCGCGGCTTTATCTAAAGAGAAAAGGGTGCTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCGGATCGTTTGGATGAAGATGCGAGTCAACTGAACGTGTTTGCGGAAACGGACTTAATGGTTATTCATGAAGCG
GTGAAAAAGGTCGAACCTGATTTAATTGTAGTGGACTCTATTCAGACGATCTACCATCCCGAAATCAGTTCGGCGCCTGG
CTCTGTATCTCAAGTTCGTGAAAGTACACAAAGCTTGATGCACATCGCAAAACAAATGAATGTCGCTACGTTTATTGTAG
GCCATGTGACGAAAGAAGGCCAAATCGCAGGGCCGCGTTTACTTGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCATGCGTATCGTATTTTAAGAGCGGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAAT
GAAACAGTCAGGTTTAAAAAGCGTGCTTAACCCGTCAGAAATGTTTTTAGAAGAACGGACGACCAATGTTGCAGGTTCGA
CAATTGTCGCAACGATGGAAGGGACACGCCCATTGTTAATTGAAGTACAAGCGCTTGTCACACCGACGACGTTCAATAAT
CCGAGACGTATGGCGACAGGTATTGACCATAATCGCCTCAGTTTGTTAATGGCGGTGTTAGAGAAAAAAGAAGGTTATTT
ATTACAACAACAAGACGCTTACATTAAGGTGGCAGGGGGCGTCAAACTCTCTGAACCTGCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGACGGCCTCGATTGTTATATTGGCGAGGTTGGATTGACTGGTGAG
GTCCGTCGTGTTTCGCGTATTGAACAACGTGTGCAAGAAGCAGCAAAACTGGGCTTTAAACGCGTGATTATCCCCAAAAA
CAATATTGGCGGATGGCACTTCCCAGAAGGTATTGAAGTGATTGGTGTGACTTCTGTCAATGAAGCATTGAAATACGCAT
TAAAAAATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166QVY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.658
  radA Streptococcus pneumoniae Rx1

58.628

99.123

0.581
  radA Streptococcus pneumoniae D39

58.628

99.123

0.581
  radA Streptococcus pneumoniae R6

58.628

99.123

0.581
  radA Streptococcus pneumoniae TIGR4

58.628

99.123

0.581
  radA Streptococcus mitis NCTC 12261

58.628

99.123

0.581
  radA Streptococcus mitis SK321

58.628

99.123

0.581