Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QQW97_RS11640 Genome accession   NZ_CP127089
Coordinates   2183550..2184170 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain KK026     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2178550..2189170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQW97_RS11600 (QQW97_11595) ptsA 2179681..2180187 (-) 507 WP_009967573.1 PTS glucose transporter subunit IIA -
  QQW97_RS11605 (QQW97_11600) ypqA 2180325..2180744 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  QQW97_RS11610 (QQW97_11605) sppG 2180765..2181142 (-) 378 WP_004398696.1 YppG family protein -
  QQW97_RS11615 (QQW97_11610) yppF 2181330..2181518 (+) 189 WP_003230690.1 YppF family protein -
  QQW97_RS11620 (QQW97_11615) yppE 2181557..2181928 (-) 372 WP_003246080.1 YppE family protein -
  QQW97_RS11625 (QQW97_11620) yppD 2181974..2182219 (-) 246 WP_004398488.1 YppD family protein -
  QQW97_RS11630 (QQW97_11625) sspM 2182418..2182522 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QQW97_RS11635 (QQW97_11630) yppC 2182547..2183509 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  QQW97_RS11640 (QQW97_11635) recU 2183550..2184170 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  QQW97_RS11645 (QQW97_11640) ponA 2184192..2186936 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  QQW97_RS11650 (QQW97_11645) ypoC 2187012..2187506 (-) 495 WP_009967579.1 YpoC family protein -
  QQW97_RS11655 (QQW97_11650) nth 2187503..2188162 (-) 660 WP_009967580.1 endonuclease III -
  QQW97_RS11660 (QQW97_11655) dnaD 2188181..2188879 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=841530 QQW97_RS11640 WP_004399067.1 2183550..2184170(+) (recU) [Bacillus subtilis strain KK026]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=841530 QQW97_RS11640 WP_004399067.1 2183550..2184170(+) (recU) [Bacillus subtilis strain KK026]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1