Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QO021_RS19635 Genome accession   NZ_CP127045
Coordinates   4245074..4245790 (-) Length   238 a.a.
NCBI ID   WP_010214839.1    Uniprot ID   -
Organism   Pseudomonas amygdali pv. lachrymans strain YM7902     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4240074..4250790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QO021_RS19610 (QO021_19605) murB 4241633..4242652 (-) 1020 WP_005743846.1 UDP-N-acetylmuramate dehydrogenase -
  QO021_RS19615 (QO021_19610) kdsB 4242687..4243451 (-) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QO021_RS19620 (QO021_19615) - 4243448..4243633 (-) 186 WP_002552679.1 Trm112 family protein -
  QO021_RS19625 (QO021_19620) lpxK 4243651..4244646 (-) 996 WP_005743845.1 tetraacyldisaccharide 4'-kinase -
  QO021_RS19630 (QO021_19625) - 4244646..4245077 (-) 432 WP_002552677.1 biopolymer transporter ExbD -
  QO021_RS19635 (QO021_19630) exbB 4245074..4245790 (-) 717 WP_010214839.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QO021_RS19640 (QO021_19635) comA 4245833..4248049 (-) 2217 WP_005743843.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QO021_RS19645 (QO021_19640) - 4248186..4248974 (-) 789 WP_005743842.1 ABC transporter permease -
  QO021_RS19650 (QO021_19645) - 4248971..4249903 (-) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  QO021_RS19655 (QO021_19650) - 4250087..4250710 (-) 624 WP_004657835.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25818.38 Da        Isoelectric Point: 7.9113

>NTDB_id=841459 QO021_RS19635 WP_010214839.1 4245074..4245790(-) (exbB) [Pseudomonas amygdali pv. lachrymans strain YM7902]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=841459 QO021_RS19635 WP_010214839.1 4245074..4245790(-) (exbB) [Pseudomonas amygdali pv. lachrymans strain YM7902]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGC
CGCATCTGCTCGGACAGGTCTGGCAGTGGATCCAGGAAAAGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGAC
TCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAATTCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCTGAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTG
GCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCGGCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTG
CTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCGTCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCG
CTTTCTGCAAAGTCGCGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693