Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   VMR32_RS03580 Genome accession   NZ_CP142601
Coordinates   740747..743590 (-) Length   947 a.a.
NCBI ID   WP_012613540.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Tongji     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 735747..748590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VMR32_RS03550 (VMR32_03550) rpsK 735867..736256 (+) 390 WP_003093689.1 30S ribosomal protein S11 -
  VMR32_RS03555 (VMR32_03555) rpsD 736273..736893 (+) 621 WP_003093678.1 30S ribosomal protein S4 -
  VMR32_RS03560 (VMR32_03560) - 736916..737917 (+) 1002 WP_003093675.1 DNA-directed RNA polymerase subunit alpha -
  VMR32_RS03565 (VMR32_03565) rplQ 737961..738350 (+) 390 WP_003093672.1 50S ribosomal protein L17 -
  VMR32_RS03570 (VMR32_03570) katA 738632..740080 (+) 1449 WP_003103909.1 catalase KatA -
  VMR32_RS03575 (VMR32_03575) bfr 740211..740675 (+) 465 WP_003093668.1 bacterioferritin -
  VMR32_RS03580 (VMR32_03580) uvrA 740747..743590 (-) 2844 WP_012613540.1 excinuclease ABC subunit UvrA Machinery gene
  VMR32_RS03585 (VMR32_03585) - 743804..745192 (+) 1389 WP_003103910.1 MFS transporter -
  VMR32_RS03590 (VMR32_03590) ssb 745209..745706 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  VMR32_RS03595 (VMR32_03595) pchA 745795..747225 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  VMR32_RS03600 (VMR32_03600) pchB 747222..747527 (-) 306 WP_009877106.1 isochorismate lyase PchB -
  VMR32_RS03605 (VMR32_03605) pchC 747527..748282 (-) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -

Sequence

Protein


Download         Length: 947 a.a.        Molecular weight: 104733.33 Da        Isoelectric Point: 6.4808

>NTDB_id=841450 VMR32_RS03580 WP_012613540.1 740747..743590(-) (uvrA) [Pseudomonas aeruginosa strain Tongji]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALVAPMDED
EDEDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYF
QMLGSLAQHYGFSLEEPFDELGAEHQKVVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELA
KFLSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYL
TLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVV
DIGPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCI
TGVSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGV
PEARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEARE
FFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRL
RDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMPQSHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2844 bp        

>NTDB_id=841450 VMR32_RS03580 WP_012613540.1 740747..743590(-) (uvrA) [Pseudomonas aeruginosa strain Tongji]
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT
CGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAAGGCCAGCGGCGCTACG
TGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGACGTGGACACCATCGAAGGGCTGTCG
CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA
CCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTCCTGGCCCTGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGCTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGA
CGAAGTGCCGAAGCTGGATAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCC
AGCAACGCCTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC
GAGGACGAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCTATCAGCGAGCTGGA
ACCCAAGCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCGGCGTGAAGCAATTCTTCGACG
CGCGCCGGGTGGTCAACGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTC
CAGATGCTCGGTTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTCGACGAACTCGGCGCCGAACACCAGAA
GGTGGTGCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTATCTCAACGACCGCGGCGACATCGTCAAGCGCTCGC
ACCCCTTCGAAGGCATCCTGCCGAACCTTGAGCGGCGCTACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCC
AAGTTCCTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGA
CCGGACGCTGCCGGCGATCACCGCGATGCCGGTCGGCGAAGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCC
GTGGCGAGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTG
ACCCTCGACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCT
GGTGGGAGTGATGTACATCCTCGACGAACCCTCGATCGGCCTGCACCAACGCGACAACGAGCGCCTGCTCGGCACCCTCA
CCCACCTGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGACTCGCCGACTACGTCGTC
GACATCGGTCCGGGCGCCGGCGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGA
CTCGCTGACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTTCCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGC
TGCTGAAGCTGAAAGGCGCCCGCGGCAACAACCTGCAGAACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATC
ACCGGGGTCTCGGGCTCCGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGC
GACTACCCTGGAAGTGGCGCCGTACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCC
CGATCGGTCGTACCCCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTTTCCGGCGTG
CCGGAGGCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGG
CGACGGCGTGATCAAGGTGGAGATGCACTTCCTGCCGGATATCTACGTTCCCTGCGATGTCTGCAAGGGCAAGCGCTACA
ACCGCGAGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAGGTGCTGGAGATGACCATCGAGGAAGCCCGCGAG
TTCTTCGACGCAGTCCCCGCCCTGGCGCGCAAGCTGCAGACGCTGATGGACGTCGGCCTGTCCTACATCAAGCTGGGCCA
GAGCGCGACCACCCTCTCGGGCGGCGAGGCGCAACGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGCGATACCGGCAAGA
CCCTGTACATCCTCGACGAACCGACCACCGGCCTGCATTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTG
CGCGACCACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGG
CCCCGAGGGCGGCTCCAAGGGTGGCCAGATCATCGCCAACGGTACGCCGGAGCAGGTGGCCGAGATGCCCCAGTCGCACA
CCGGCCACTTCCTCAAGCCGTTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(293-401)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.113

100

0.572
  uvrA Streptococcus pneumoniae TIGR4

57.113

100

0.572
  uvrA Streptococcus pneumoniae D39

57.113

100

0.572