Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QQO08_RS08505 Genome accession   NZ_CP127024
Coordinates   1718015..1719085 (-) Length   356 a.a.
NCBI ID   WP_000775706.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC239-MRSA-III(var.) isolate Trinidad&Tobago_2020-048_8421A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1713015..1724085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQO08_RS08465 (QQO08_08465) gcvPA 1713192..1714538 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QQO08_RS08470 (QQO08_08470) gcvT 1714558..1715649 (-) 1092 WP_000093351.1 glycine cleavage system aminomethyltransferase GcvT -
  QQO08_RS08475 (QQO08_08475) - 1715808..1716332 (-) 525 WP_001015117.1 shikimate kinase -
  QQO08_RS08480 (QQO08_08480) - 1716322..1716468 (-) 147 WP_001789879.1 hypothetical protein -
  QQO08_RS08485 (QQO08_08485) comGF 1716565..1717062 (-) 498 WP_001803317.1 competence type IV pilus minor pilin ComGF Machinery gene
  QQO08_RS08490 (QQO08_08490) comGE 1716980..1717279 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QQO08_RS08495 (QQO08_08495) comGD 1717266..1717712 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  QQO08_RS08500 (QQO08_08500) comGC 1717690..1718001 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QQO08_RS08505 (QQO08_08505) comGB 1718015..1719085 (-) 1071 WP_000775706.1 competence type IV pilus assembly protein ComGB Machinery gene
  QQO08_RS08510 (QQO08_08510) comGA 1719057..1720031 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  QQO08_RS08515 (QQO08_08515) - 1720083..1720706 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QQO08_RS08520 (QQO08_08520) - 1720703..1721032 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QQO08_RS08525 (QQO08_08525) - 1721032..1722018 (-) 987 WP_000161314.1 ROK family glucokinase -
  QQO08_RS08530 (QQO08_08530) - 1722015..1722218 (-) 204 WP_000087561.1 YqgQ family protein -
  QQO08_RS08535 (QQO08_08535) - 1722199..1723662 (-) 1464 WP_285236772.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41391.84 Da        Isoelectric Point: 10.0540

>NTDB_id=841375 QQO08_RS08505 WP_000775706.1 1718015..1719085(-) (comGB) [Staphylococcus aureus strain CC239-MRSA-III(var.) isolate Trinidad&Tobago_2020-048_8421A]
MKLQCINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKKLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=841375 QQO08_RS08505 WP_000775706.1 1718015..1719085(-) (comGB) [Staphylococcus aureus strain CC239-MRSA-III(var.) isolate Trinidad&Tobago_2020-048_8421A]
GTGAAACTACAATGCATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGAAACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994