Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   VVB72_RS09090 Genome accession   NZ_CP142589
Coordinates   1838844..1839515 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis subsp. lactis strain C20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1833844..1844515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVB72_RS09065 (VVB72_09065) pheA 1834149..1834988 (-) 840 WP_023188548.1 prephenate dehydratase -
  VVB72_RS09070 (VVB72_09070) - 1834990..1835478 (-) 489 WP_017864896.1 shikimate kinase -
  VVB72_RS09075 (VVB72_09075) aroA 1835502..1836794 (-) 1293 WP_023188546.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  VVB72_RS09080 (VVB72_09080) - 1836915..1837979 (-) 1065 WP_010906116.1 prephenate dehydrogenase -
  VVB72_RS09085 (VVB72_09085) - 1837982..1838857 (-) 876 WP_003132784.1 sensor histidine kinase -
  VVB72_RS09090 (VVB72_09090) braR 1838844..1839515 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  VVB72_RS09095 (VVB72_09095) - 1839518..1840582 (-) 1065 WP_023188544.1 VanZ family protein -
  VVB72_RS09100 (VVB72_09100) - 1840762..1841873 (+) 1112 WP_088792927.1 IS3-like element IS981 family transposase -
  VVB72_RS09105 (VVB72_09105) - 1841990..1843993 (-) 2004 WP_033899972.1 ABC transporter permease -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=841235 VVB72_RS09090 WP_003132782.1 1838844..1839515(-) (braR) [Lactococcus lactis subsp. lactis strain C20]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=841235 VVB72_RS09090 WP_003132782.1 1838844..1839515(-) (braR) [Lactococcus lactis subsp. lactis strain C20]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGATATGAATCAAGTAACCGCCATGAATCAAGGAGCTGATGATTTTGTAACTAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413