Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   VVB72_RS02340 Genome accession   NZ_CP142589
Coordinates   462307..463023 (-) Length   238 a.a.
NCBI ID   WP_039114644.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain C20     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 457307..468023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVB72_RS02325 (VVB72_02325) cdaA 459000..459878 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  VVB72_RS02330 (VVB72_02330) - 459868..460827 (+) 960 WP_012897245.1 YbbR-like domain-containing protein -
  VVB72_RS02335 (VVB72_02335) glmM 460873..462231 (+) 1359 WP_003131539.1 phosphoglucosamine mutase -
  VVB72_RS02340 (VVB72_02340) treR 462307..463023 (-) 717 WP_039114644.1 trehalose operon repressor Regulator
  VVB72_RS02345 (VVB72_02345) - 463134..463619 (+) 486 WP_039114646.1 PTS glucose transporter subunit IIA -
  VVB72_RS02350 (VVB72_02350) - 463756..465321 (+) 1566 WP_025016545.1 PTS transporter subunit EIIC -
  VVB72_RS02355 (VVB72_02355) - 465389..467698 (+) 2310 WP_039114648.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27864.58 Da        Isoelectric Point: 6.7758

>NTDB_id=841198 VVB72_RS02340 WP_039114644.1 462307..463023(-) (treR) [Lactococcus lactis subsp. lactis strain C20]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSKGLTPEHAKISTY
DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=841198 VVB72_RS02340 WP_039114644.1 462307..463023(-) (treR) [Lactococcus lactis subsp. lactis strain C20]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCAAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATACTCTAGGGCTTGATATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTTTCTGTCAAATCCCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCCAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462