Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   VVB72_RS00560 Genome accession   NZ_CP142589
Coordinates   101570..102355 (-) Length   261 a.a.
NCBI ID   WP_021722894.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain C20     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 96570..107355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVB72_RS00535 (VVB72_00535) - 97403..98305 (-) 903 WP_039114442.1 LCP family protein -
  VVB72_RS00540 (VVB72_00540) - 98407..98600 (+) 194 Protein_97 hypothetical protein -
  VVB72_RS00545 (VVB72_00545) rpmG 99021..99170 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  VVB72_RS00550 (VVB72_00550) rpmF 99200..99373 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  VVB72_RS00555 (VVB72_00555) - 99736..101517 (+) 1782 WP_021722893.1 heavy metal translocating P-type ATPase -
  VVB72_RS00560 (VVB72_00560) spo0J 101570..102355 (-) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  VVB72_RS00565 (VVB72_00565) rarA 102410..103669 (-) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  VVB72_RS00570 (VVB72_00570) - 103713..104201 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  VVB72_RS00575 (VVB72_00575) - 104354..104821 (+) 468 WP_021722895.1 DUF3013 family protein -
  VVB72_RS00580 (VVB72_00580) - 104851..106404 (+) 1554 WP_038598438.1 ABC-F family ATP-binding cassette domain-containing protein -
  VVB72_RS00585 (VVB72_00585) - 106535..106819 (+) 285 WP_010905114.1 hypothetical protein -
  VVB72_RS00590 (VVB72_00590) - 106857..107291 (+) 435 WP_021722897.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29755.63 Da        Isoelectric Point: 9.5731

>NTDB_id=841184 VVB72_RS00560 WP_021722894.1 101570..102355(-) (spo0J) [Lactococcus lactis subsp. lactis strain C20]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=841184 VVB72_RS00560 WP_021722894.1 101570..102355(-) (spo0J) [Lactococcus lactis subsp. lactis strain C20]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
TAAAAGCTTGGCACAATTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAACAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGATAATCTTGATGAACTAGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471