Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   VVB72_RS00320 Genome accession   NZ_CP142589
Coordinates   51914..52669 (+) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis subsp. lactis strain C20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 46914..57669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVB72_RS00290 (VVB72_00290) - 46973..47422 (+) 450 WP_039114390.1 GNAT family N-acetyltransferase -
  VVB72_RS00295 (VVB72_00295) - 47499..47741 (+) 243 WP_021723183.1 TM2 domain-containing protein -
  VVB72_RS00300 (VVB72_00300) - 47822..49444 (-) 1623 WP_039114392.1 SulP family inorganic anion transporter -
  VVB72_RS00305 (VVB72_00305) - 49654..50175 (+) 522 WP_021723185.1 GNAT family N-acetyltransferase -
  VVB72_RS00315 (VVB72_00315) - 50640..51815 (+) 1176 WP_012896922.1 pyridoxal phosphate-dependent aminotransferase -
  VVB72_RS00320 (VVB72_00320) recO 51914..52669 (+) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  VVB72_RS00325 (VVB72_00325) - 52784..52957 (+) 174 WP_021214949.1 helix-turn-helix domain-containing protein -
  VVB72_RS00330 (VVB72_00330) lpdA 53028..54446 (-) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -
  VVB72_RS00335 (VVB72_00335) - 54640..56238 (-) 1599 WP_021723187.1 2-oxo acid dehydrogenase subunit E2 -
  VVB72_RS00340 (VVB72_00340) - 56231..57211 (-) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=841183 VVB72_RS00320 WP_003132217.1 51914..52669(+) (recO) [Lactococcus lactis subsp. lactis strain C20]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=841183 VVB72_RS00320 WP_003132217.1 51914..52669(+) (recO) [Lactococcus lactis subsp. lactis strain C20]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACAATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTAATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534