Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VOS73_RS01250 Genome accession   NZ_CP142398
Coordinates   263919..264902 (+) Length   327 a.a.
NCBI ID   WP_001196444.1    Uniprot ID   -
Organism   Escherichia coli strain SX4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 258919..269902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOS73_RS01235 (VOS73_01225) dppA 260219..261826 (+) 1608 WP_061093023.1 dipeptide ABC transporter substrate-binding protein DppA -
  VOS73_RS01240 (VOS73_01230) dppB 261977..262996 (+) 1020 WP_000938855.1 dipeptide ABC transporter permease DppB -
  VOS73_RS01245 (VOS73_01235) dppC 263006..263908 (+) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  VOS73_RS01250 (VOS73_01240) amiE 263919..264902 (+) 984 WP_001196444.1 dipeptide ABC transporter ATP-binding protein Regulator
  VOS73_RS01255 (VOS73_01245) dppF 264899..265903 (+) 1005 WP_000103576.1 dipeptide ABC transporter ATP-binding subunit DppF -
  VOS73_RS01260 (VOS73_01250) yhjV 265933..267204 (-) 1272 WP_061093024.1 aromatic amino acid transport family protein -
  VOS73_RS01265 (VOS73_01255) - 267680..267787 (+) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
  VOS73_RS01270 (VOS73_01260) - 268163..268270 (+) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35830.37 Da        Isoelectric Point: 6.5813

>NTDB_id=841104 VOS73_RS01250 WP_001196444.1 263919..264902(+) (amiE) [Escherichia coli strain SX4]
MALLNIDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDKCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=841104 VOS73_RS01250 WP_001196444.1 263919..264902(+) (amiE) [Escherichia coli strain SX4]
ATGGCGTTATTAAATATAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCTGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTGATGGCGGAAAAGCTGGAGTTTAACGGTCAGGATTTACAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGGGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCAACCACTGCGCTGGACGTGAC
CATTCAGGCGCAAATCATTGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGTCAGGTGGTGGAAACGGGCGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCGGAATTTGCCCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTTGTTCCCGGCAAGTACGACCGTCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTACGCCA
CTGACAAATGCCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(24-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMG 18311

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMD-9

42.991

98.165

0.422
  oppD Streptococcus mutans UA159

41.066

97.554

0.401