Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   U5897_RS17805 Genome accession   NZ_CP142393
Coordinates   3669729..3671177 (+) Length   482 a.a.
NCBI ID   WP_000778202.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 38     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3664729..3676177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5897_RS17785 (U5897_17785) - 3666301..3666900 (+) 600 WP_000562198.1 TetR/AcrR family transcriptional regulator -
  U5897_RS17790 (U5897_17790) - 3666932..3668095 (-) 1164 WP_094850355.1 acyl-CoA dehydrogenase family protein -
  U5897_RS17795 (U5897_17795) - 3668232..3668795 (-) 564 WP_000988417.1 DUF4256 domain-containing protein -
  U5897_RS17800 (U5897_17800) - 3668812..3669162 (-) 351 WP_000455811.1 GFA family protein -
  U5897_RS17805 (U5897_17805) rpoN/rpoN1 3669729..3671177 (+) 1449 WP_000778202.1 RNA polymerase factor sigma-54 Machinery gene
  U5897_RS17810 (U5897_17810) hpf 3671346..3671684 (+) 339 WP_001167461.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  U5897_RS17815 (U5897_17815) ibaG 3671823..3672074 (+) 252 WP_001083680.1 BolA family iron metabolism protein IbaG -
  U5897_RS17820 (U5897_17820) murA 3672081..3673337 (+) 1257 WP_000357156.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  U5897_RS17825 (U5897_17825) hisG 3673337..3674020 (+) 684 WP_001000724.1 ATP phosphoribosyltransferase -
  U5897_RS17830 (U5897_17830) hisD 3674126..3675415 (+) 1290 WP_001253725.1 histidinol dehydrogenase -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 55082.97 Da        Isoelectric Point: 4.6620

>NTDB_id=841097 U5897_RS17805 WP_000778202.1 3669729..3671177(+) (rpoN/rpoN1) [Acinetobacter baumannii strain 38]
MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKVEDESLAESLSTLEHKETDDLTTELNADHLP
DDLPVDTEWDDIYTHQSTALGTPEFEEREDNRQVHLTLKEHILEQVNLLHFSKIDQLIAYCIVDALDDKGFLDAELEEII
LAVQHLLSEMDIDEEVEEDEVLVVLKHIQRLDPIGIGARNLAECLKVQLEFLPRETEYLKEARSLLQYYELLIANDLNKL
LKQTGLSKEQLKFAVDLLKTLKPYPGMDFEKQESEYQIPDVVVAKKDLHWQVQLNPDVMPKLRINSFYSSMIRRADQSDD
NLYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQKAFLEIGPEAMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRG
LFELKYFFSSHVGTTTGGEASSTAIRAMIKKLVSNENPRKPLSDNAIAALLKEEGIEVARRTVAKYRESLHIPSSSERKV
LI

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=841097 U5897_RS17805 WP_000778202.1 3669729..3671177(+) (rpoN/rpoN1) [Acinetobacter baumannii strain 38]
ATGAAATTATCTGTTGGATTGAAAGTTGCGAATTCATTATCGTTAACGCCTCAATTGCAGCAGGCAATCCGTTTACTACA
ACTTTCTAGCCTAGAGTTAGAGCAAGAAATCCAAATTCAATTAGATAGTAATCCATTACTTGAAAAAGTAGAAGATGAAT
CACTAGCAGAAAGTTTATCTACTTTAGAACACAAAGAAACAGATGACCTTACAACAGAGTTGAATGCTGATCACTTACCT
GATGACTTGCCTGTTGATACTGAATGGGATGACATTTATACACATCAATCCACTGCTTTGGGCACTCCTGAGTTCGAAGA
GCGTGAAGATAATCGCCAAGTTCACCTGACGCTTAAAGAACATATTTTGGAGCAAGTGAACTTACTACATTTTTCAAAAA
TAGATCAGTTGATTGCTTATTGCATAGTTGATGCTTTAGATGATAAAGGTTTTCTGGATGCTGAATTAGAAGAGATTATT
TTGGCAGTACAGCATTTATTAAGTGAGATGGATATAGACGAGGAAGTGGAAGAGGATGAAGTTTTAGTAGTCTTAAAACA
TATTCAACGTCTTGATCCAATTGGTATCGGAGCTCGTAATTTAGCTGAATGTTTAAAAGTTCAGTTGGAGTTCTTGCCTC
GAGAAACTGAATATTTGAAAGAAGCCAGAAGTCTACTTCAATATTACGAATTACTGATTGCGAATGATCTTAATAAATTA
TTGAAGCAAACAGGGCTTTCCAAAGAACAATTAAAATTTGCAGTTGATTTATTAAAAACATTAAAGCCTTATCCAGGCAT
GGATTTTGAAAAGCAAGAATCAGAGTATCAAATTCCTGACGTAGTCGTTGCCAAGAAGGACTTGCATTGGCAAGTTCAGT
TAAACCCTGATGTGATGCCAAAATTAAGAATCAATTCTTTTTATTCGAGTATGATTCGTAGGGCAGATCAAAGTGATGAT
AATTTATACCTACGTAATCAAATGCTTGAGGCTAAAAATTTTATAAAAAGTATTGATGAACGGCACAAAACATTATTAAA
AGTTGCGACTTGTATTGTTGAGCATCAAAAAGCATTTCTTGAAATAGGTCCCGAAGCAATGAAACCTTTAGTACTAAGGG
ATGTTGCAGAAGAAGTAGAATTACATGAGTCGACCGTTTCTCGCGTTACAACAAATAAGTATATGCTTACTCCACGTGGA
CTTTTTGAGTTGAAATACTTCTTTTCTAGTCATGTGGGGACAACCACAGGAGGTGAGGCTTCTTCTACCGCAATTCGGGC
GATGATTAAAAAGTTAGTTTCTAATGAAAATCCGCGTAAACCTTTGTCTGATAATGCAATTGCTGCTTTATTGAAAGAGG
AGGGAATAGAAGTAGCTAGAAGGACTGTAGCAAAATATAGAGAATCGTTACATATTCCATCGTCATCCGAGAGAAAAGTC
TTGATCTAA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(111-308)

Sigma-54, DNA binding domain (Sigma54_DBD)

(323-479)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(7-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

43.333

100

0.459